bwaIndexPrefix: Generates a prefix for the index files

Description Usage Arguments Author(s) Examples

Description

Generates a prefix for the index files based on a FASTA pathname.

Usage

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## Default S3 method:
bwaIndexPrefix(pathnameFA, subdir="bwa", tags="*", ...)

Arguments

pathnameFA

The FASTA file.

subdir

The subdirectory relative to the FASTA file where to put the BWA index files.

tags

Tags added to the directory of the index set.

...

Not used.

Author(s)

Henrik Bengtsson

Examples

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  pathnameFA <- "annotationData/organisms/Lambda_phage/lambda_virus.fa"
  prefix <- bwaIndexPrefix(pathnameFA)
  print(prefix)

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.