Description Usage Arguments Author(s) Examples
Generates a prefix for a set of index files based on a FASTA pathname.
1 2 | ## Default S3 method:
createIndexPrefix(pathnameFA, subdir=NULL, tags="*", asteriskTags=NULL, ...)
|
pathnameFA |
The FASTA file. |
subdir |
The subdirectory relative to the FASTA file where to put the index files. |
tags |
Tags added to the directory of the index set. |
asteriskTags |
Tags to replace |
... |
Not used. |
Henrik Bengtsson
1 2 3 4 5 | pathnameFA <- "annotationData/organisms/Lambda_phage/lambda_virus.fa"
prefix <- createIndexPrefix(pathnameFA)
print(prefix)
prefix <- createIndexPrefix(pathnameFA, tags="*,foo")
print(prefix)
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