buildBowtie2IndexSet.FastaReferenceFile: Builds a Bowtie2 index files set
In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework
Description
Usage
Arguments
Value
Author(s)
See Also
Description
Builds a Bowtie2 index files set.
Usage
1
2
## S3 method for class 'FastaReferenceFile'
buildBowtie2IndexSet(this, ..., skip=TRUE, verbose=FALSE)
Arguments
...
Additional arguments passed to bowtie2Build().
skip
If TRUE, the index files are not rebuilt if already available.
verbose
See Verbose.
Value
Returns a GenericDataFileSet consisting of the bowtie2 index files.
Author(s)
Henrik Bengtsson
See Also
Internally, bowtie2Build() is used.
HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.
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Description Usage Arguments Value Author(s) See Also
Description
Builds a Bowtie2 index files set.
Usage
1 2 | ## S3 method for class 'FastaReferenceFile'
buildBowtie2IndexSet(this, ..., skip=TRUE, verbose=FALSE)
|
Arguments
... |
Additional arguments passed to |
skip |
If |
verbose |
See |
Value
Returns a GenericDataFileSet consisting of the bowtie2 index files.
Author(s)
Henrik Bengtsson
See Also
Internally, bowtie2Build() is used.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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