capabilitiesOf.AromaSeq: Checks which tools are supported

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Checks which tools are supported.

Usage

## Static method (use this):
## AromaSeq$capabilitiesOf(what=NULL, force=FALSE, ...)

## Don't use the below:
## S3 method for class 'AromaSeq'
capabilitiesOf(static, what=NULL, force=FALSE, ...)

Arguments

what	Optional character vector of which tools to check.
force	If TRUE, cached results are ignored, otherwise not.
...	Not used.

Value

Returns a logical named character vector.

Author(s)

Henrik Bengtsson

Examples

  # Display which tools are supported by the package
  print(capabilitiesOf(aroma.seq))

  # Check whether BWA is supported
  print(isCapableOf(aroma.seq, "bwa"))

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.