fastQC: Calls the FastQC executable

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Calls the FastQC executable.

Usage

## Default S3 method:
fastQC(..., pathnames=character(0L), outPath=NULL, verbose=FALSE)

Arguments

pathnames	Zero or more input pathnames.
...	Additional arguments passed to systemFastQC().
verbose	See Verbose.

Author(s)

Henrik Bengtsson

References

[1] Simon Andrews, FastQC - A quality control tool for high throughput sequence data, March 2014. http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ [2] Simon Andrews, FastQC: A quality control application for FastQ data [ANNOUNCEMENT], 2010-04-26. http://seqanswers.com/forums/showthread.php?t=4846

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.