doHTSeqCount: Counting reads in features

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Counting reads in features based on [1].

Usage

  doHTSeqCount(...)
  ## S3 method for class 'BamDataSet'
doHTSeqCount(dataSet, transcripts, ..., verbose=FALSE)

Arguments

dataSet	A BamDataSet.
transcripts	A GtfDataFile.
...	Additional arguments passed to HTSeqCounting.
verbose	See Verbose.

Value

Returns a HTSeqCountDataSet.

Author(s)

Henrik Bengtsson

References

[1] Simon Anders, HTSeq: Analysing high-throughput sequencing data with Python, EMBL, Jan 2014. http://www-huber.embl.de/users/anders/HTSeq/

See Also

For more details, see HTSeqCounting.

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.