bwaIndex: Calls the BWA index command

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Calls the BWA index command.

Usage

## Default S3 method:
bwaIndex(pathnameFA, indexPrefix="*", ..., verbose=FALSE)

Arguments

pathnameFA	The FASTA file to be indexed.
indexPrefix	The prefix for the generated index files.
...	Additional arguments specifying BWA 'index' switches passed to systemBWA().
verbose	See Verbose.

Author(s)

Henrik Bengtsson

Examples

## Not run: 
  bwaIndex("annotationData/organisms/Lambda_phage/lambda_virus.fa")

## End(Not run)

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.