doDownsample: Generates a downsampled FASTQ or BAM data set
In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework
Description
Usage
Arguments
Value
Author(s)
Description
Generates a downsampled FASTQ or BAM data set.
Usage
1
2
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doDownsample(...)
## S3 method for class 'BamDataSet'
doDownsample(dataSet, subset=1e+06, ..., verbose=FALSE)
## S3 method for class 'FastqDataSet'
doDownsample(dataSet, subset=1e+06, ..., verbose=FALSE)
Arguments
dataSet
A BamDataSet or FastqDataSet.
subset
An integer specifying the total number of reads to sample,
or a double specifying the fraction of total number of reads to sample.
...
Additional arguments passed to specific downsampler, e.g.
BamDownsampler and FastqDownsampler.
verbose
See Verbose.
Value
Returns a GenericDataFileSet of the same class
as the input data set dataSet.
Author(s)
Henrik Bengtsson
HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.
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Description Usage Arguments Value Author(s)
Description
Generates a downsampled FASTQ or BAM data set.
Usage
1 2 3 4 5 | doDownsample(...)
## S3 method for class 'BamDataSet'
doDownsample(dataSet, subset=1e+06, ..., verbose=FALSE)
## S3 method for class 'FastqDataSet'
doDownsample(dataSet, subset=1e+06, ..., verbose=FALSE)
|
Arguments
dataSet |
A |
subset |
An |
... |
Additional arguments passed to specific downsampler, e.g.
|
verbose |
See |
Value
Returns a GenericDataFileSet of the same class
as the input data set dataSet.
Author(s)
Henrik Bengtsson
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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