buildDictionary.FastaReferenceFile: Builds a DICT sequence dictionary file

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Builds a DICT sequence dictionary file.

Usage

## S3 method for class 'FastaReferenceFile'
buildDictionary(this, ..., skip=TRUE, verbose=FALSE)

Arguments

...	Additional arguments passed to systemPicard().
skip	If TRUE, the dictionary is not rebuilt if already available.
verbose	See Verbose.

Value

Returns the pathname to the DICT file.

Author(s)

Henrik Bengtsson

References

[1] Geraldine van der Auwera, How can I prepare a FASTA file to use as reference?, GATK Forum, Sept 2013. http://gatkforums.broadinstitute.org/discussion/1601/how-can-i-prepare-a-fasta-file-to-use-as-reference

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.