API for James-Thorson/VAST
Vector-Autoregressive Spatio-Temporal (VAST) Model
| Global functions | |
|---|---|
| .onAttach | Source code |
| Build_TMB_Fn | Man page Source code |
| Calc_Anisotropic_Mesh | Man page Source code Source code |
| Calc_Kmeans | Source code |
| Calc_Polygon_Areas_and_Polygons_Fn | Man page Source code |
| Coherence | Man page Source code |
| Convert_LL_to_EastNorth_Fn | Man page Source code |
| Convert_LL_to_UTM_Fn | Man page Source code |
| Crossvalidate_Fn | Man page Source code |
| Data_Fn | Man page Source code |
| Effect.fit_model | Man page Source code |
| GOA_pcod_covariate_example | Man page |
| Geostat_Sim | Man page Source code |
| Heatmap_Legend | Source code |
| Make_Map | Source code |
| Param_Fn | Man page Source code |
| PlotLoadings | Source code |
| PlotMap_Fn | Man page Source code |
| Plot_Ellipse_Fn | Source code |
| Plot_Overdispersion | Man page Source code |
| Plot_States_in_UTM_Fn | Source code |
| Plot_factors | Man page Source code |
| Plot_range_quantiles | Source code |
| Prepare_AI_Extrapolation_Data_Fn | Source code |
| Prepare_BC_Coast_Extrapolation_Data_Fn | Source code |
| Prepare_BFISH_MHI_Extrapolation_Data_Fn | Source code |
| Prepare_BSslope_Extrapolation_Data_Fn | Source code |
| Prepare_Chukchi_Extrapolation_Data_Fn | Source code |
| Prepare_EBS_Extrapolation_Data_Fn | Source code |
| Prepare_GOA_Extrapolation_Data_Fn | Source code |
| Prepare_GOM_Extrapolation_Data_Fn | Source code |
| Prepare_GSL_Extrapolation_Data_Fn | Source code |
| Prepare_HabCam_Extrapolation_Data_Fn | Source code |
| Prepare_NBS_Extrapolation_Data_Fn | Source code |
| Prepare_NWA_Extrapolation_Data_Fn | Source code |
| Prepare_NZ_Extrapolation_Data_Fn | Source code |
| Prepare_Other_Extrapolation_Data_Fn | Source code |
| Prepare_SA_Extrapolation_Data_Fn | Source code |
| Prepare_SMI_Extrapolation_Data_Fn | Source code |
| Prepare_User_Extrapolation_Data_Fn | Source code |
| Prepare_WCGBTS_Extrapolation_Data_Fn | Source code |
| Prepare_WCGHL_Extrapolation_Data_Fn | Source code |
| Print_Message | Source code |
| Rerun_Fn | Man page Source code |
| Rotate_Fn | Source code |
| Summarize_Covariance | Man page Source code |
| TMBAIC | Man page Source code |
| Timeseries_Fn | Source code |
| VAST | Man page |
| amend_output | Man page Source code |
| apply_epsilon | Man page Source code |
| arrowtooth_trends | Man page |
| bilinear_interp | Man page Source code |
| calc_coherence | Man page Source code |
| calc_cov | Man page Source code |
| calc_synchrony | Man page Source code |
| calculate_knot_areas | Man page Source code |
| calculate_proportion | Man page Source code |
| check_fit | Man page Source code |
| combine_extrapolation_info | Man page Source code |
| combine_lists | Man page Source code |
| convert_shapefile | Man page Source code |
| convert_version_name | Man page Source code |
| fit_model | Man page Source code |
| fit_tmb | Man page Source code |
| format_covariates | Man page Source code |
| get_coef.fit_model | Source code |
| get_latest_version | Man page Source code |
| get_predict.fit_model | Source code |
| get_vcov.fit_model | Source code |
| goa_traits | Man page |
| latlon_to_SpatialPolygons | Source code |
| list_parameters | Man page Source code |
| load_example | Man page Source code |
| make_covariates | Man page Source code |
| make_data | Man page Source code |
| make_extrapolation_info | Man page Source code |
| make_kmeans | Man page Source code |
| make_map | Man page Source code |
| make_map_info | Man page Source code |
| make_mesh | Man page Source code |
| make_model | Man page Source code |
| make_parameters | Man page Source code |
| make_settings | Man page Source code |
| make_spatial_info | Man page Source code |
| map_hypervariance | Man page Source code |
| match_strata_fn | Source code |
| oneStepPredict_deltaModel | Man page Source code |
| plot.fit_model | Man page Source code |
| plot.make_extrapolation_info | Man page Source code |
| plot.make_spatial_info | Man page Source code |
| plotSites | Source code |
| plot_anisotropy | Man page Source code |
| plot_biomass_index | Man page Source code |
| plot_clusters | Man page Source code |
| plot_cov | Man page Source code |
| plot_data | Man page Source code |
| plot_dharma | Man page Source code |
| plot_eigen | Source code |
| plot_encounter_diagnostic | Man page Source code |
| plot_factors | Source code |
| plot_index | Man page Source code |
| plot_legend | Man page Source code |
| plot_loadings | Man page Source code |
| plot_maps | Man page Source code |
| plot_overdispersion | Source code |
| plot_quantile_diagnostic | Man page Source code |
| plot_quantile_residuals | Man page Source code |
| plot_range_edge | Man page Source code |
| plot_range_index | Man page Source code |
| plot_residual_semivariance | Man page Source code |
| plot_residuals | Man page Source code |
| plot_results | Man page Source code |
| plot_similarity | Man page Source code |
| plot_timeseries | Man page Source code |
| plot_variable | Man page Source code |
| pollock_cohorts | Man page |
| predict.fit_model | Man page Source code |
| print.fit_model | Man page Source code |
| print.make_data | Man page Source code |
| print.make_extrapolation_info | Man page Source code |
| print.make_model | Man page Source code |
| print.make_spatial_info | Man page Source code |
| project_coordinates | Man page Source code |
| project_model | Man page Source code |
| reload_model | Man page Source code |
| rotate_factors | Man page Source code |
| sample_variable | Man page Source code |
| set_coef.fit_model | Source code |
| simulate_data | Man page Source code |
| smallPlot | Man page Source code |
| stream_network_eel_example | Man page |
| strip_units | Man page Source code |
| summarize_covariance | Source code |
| summary.fit_model | Man page Source code |
