AztekinTailData: Obtain the Aztekin tail data

In LTLA/scRNAseq: Collection of Public Single-Cell RNA-Seq Datasets

Obtain the Aztekin tail data

Description

Obtain the Xenopus tail single-cell RNA-seq data from Aztekin et al. (2019).

Usage

AztekinTailData(legacy = FALSE)

Arguments

legacy

Logical scalar indicating whether to pull data from ExperimentHub. By default, we use data from the gypsum backend.

Details

Column metadata is provided in the same form as supplied in E-MTAB-7761. This contains information such as the treatment condition, batch, putative cell type, putative cell cycle phase.

The UMAP results are available as the "UMAP" entry in the reducedDims.

All data are downloaded from ExperimentHub and cached for local re-use. Specific resources can be retrieved by searching for scRNAseq/aztekin-tail.

Value

A SingleCellExperiment object with a single matrix of UMI counts.

Author(s)

Aaron Lun

References

Aztekin C et al. (2019). Identification of a regeneration-organizing cell in the Xenopus tail. Science 364(6441), 653-658

Examples

sce <- AztekinTailData()

LTLA/scRNAseq documentation built on April 14, 2024, 7:13 a.m.