View source: R/HermannSpermatogenesisData.R
HermannSpermatogenesisData | R Documentation |
Obtain the mouse spermatogenesis single-cell RNA-seq data from Hermann et al. (2018).
HermannSpermatogenesisData(strip = FALSE, location = TRUE, legacy = FALSE)
strip |
Logical scalar indicating whether to strip the |
location |
Logical scalar indicating whether genomic coordinates should be returned.
Only used if |
legacy |
Logical scalar indicating whether to pull data from ExperimentHub. By default, we use data from the gypsum backend. |
Column metadata contains cell types provided by the data generators at https://data.mendeley.com/datasets/kxd5f8vpt4/1#file-fe79c10b-c42e-472e-9c7e-9a9873d9b3d8.
All data are downloaded from ExperimentHub and cached for local re-use.
Specific resources can be retrieved by searching for scRNAseq/hermann-spermatogenesis
.
A SingleCellExperiment object with two matrices, containing spliced and unspliced counts, respectively.
Charlotte Soneson
Hermann B.P. et al. (2018). The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids. Cell Rep. 25(6), 1650-1667.e8.
sce <- HermannSpermatogenesisData()
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