Files in LTLA/scRNAseq

Collection of Public Single-Cell RNA-Seq Datasets

.BBSoptions

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/AztekinTailData.R R/BachMammaryData.R R/BacherTCellData.R R/BaronPancreasData.R R/BhaduriOrganoidData.R R/BuettnerESCData.R R/BunisHSPCData.R R/CampbellBrainData.R R/ChenBrainData.R R/DarmanisBrainData.R R/ERCCSpikeInConcentrations.R R/ErnstSpermatogenesisData.R R/FletcherOlfactoryData.R R/GiladiHSCData.R R/GrunHSCData.R R/GrunPancreasData.R R/HeOrganAtlasData.R R/HermannSpermatogenesisData.R R/HuCortexData.R R/JessaBrainData.R R/KolodziejczykESCData.R R/KotliarovPBMCData.R R/LaMannoBrainData.R R/LawlorPancreasData.R R/LedergorMyelomaData.R R/LengESCData.R R/LunSpikeInData.R R/MacoskoRetinaData.R R/MairPBMCData.R R/MarquesBrainData.R R/MessmerESCData.R R/MuraroPancreasData.R R/NestorowaHSCData.R R/NowakowskiCortexData.R R/PaulHSCData.R R/PollenGliaData.R R/ReprocessedData.R R/RichardTCellData.R R/RomanovBrainData.R R/SegerstolpePancreasData.R R/ShekharRetinaData.R R/StoeckiusHashingData.R R/TasicBrainData.R R/UsoskinBrainData.R R/WuKidneyData.R R/XinPancreasData.R R/ZeiselBrainData.R R/ZeiselNervousData.R R/ZhaoImmuneLiverData.R R/ZhongPrefrontalData.R R/ZilionisLungData.R R/convert_to_ensembl.R R/countErccMolecules.R R/create_sce.R R/fetchDataset.R R/listDatasets.R R/listVersions.R R/polishDataset.R R/saveDataset.R R/searchDatasets.R R/surveyDatasets.R README.md

inst/NEWS.Rd

inst/extdata/2.0.0/metadata-aztekin-tail.csv

inst/extdata/2.0.0/metadata-bach-mammary.csv

inst/extdata/2.0.0/metadata-baron-pancreas.csv

inst/extdata/2.0.0/metadata-buettner-esc.csv

inst/extdata/2.0.0/metadata-campbell-brain.csv

inst/extdata/2.0.0/metadata-chen-brain.csv

inst/extdata/2.0.0/metadata-grun-hsc.csv

inst/extdata/2.0.0/metadata-grun-pancreas.csv

inst/extdata/2.0.0/metadata-kolodziejczyk-esc.csv

inst/extdata/2.0.0/metadata-lamanno-brain.csv

inst/extdata/2.0.0/metadata-lawlor-pancreas.csv

inst/extdata/2.0.0/metadata-legacy.csv

inst/extdata/2.0.0/metadata-leng-esc.csv

inst/extdata/2.0.0/metadata-lun-spikein.csv

inst/extdata/2.0.0/metadata-macosko-retina.csv

inst/extdata/2.0.0/metadata-marques-brain.csv

inst/extdata/2.0.0/metadata-messmer-esc.csv

inst/extdata/2.0.0/metadata-muraro-pancreas.csv

inst/extdata/2.0.0/metadata-nestorowa-hsc.csv

inst/extdata/2.0.0/metadata-richard-tcell.csv

inst/extdata/2.0.0/metadata-romanov-brain.csv

inst/extdata/2.0.0/metadata-segerstolpe-pancreas.csv

inst/extdata/2.0.0/metadata-shekhar-retina.csv

inst/extdata/2.0.0/metadata-tasic-brain.csv

inst/extdata/2.0.0/metadata-usoskin-brain.csv

inst/extdata/2.0.0/metadata-xin-pancreas.csv

inst/extdata/2.0.0/metadata-zeisel-brain.csv

inst/extdata/2.2.0/metadata-ercc-concentrations.csv

inst/extdata/2.2.0/metadata-paul-hsc.csv

inst/extdata/2.4.0/metadata-hermann-spermatogenesis.csv

inst/extdata/2.4.0/metadata-hu-cortex.csv

inst/extdata/2.4.0/metadata-kotliarov-pbmc.csv

inst/extdata/2.4.0/metadata-mair-pbmc.csv

inst/extdata/2.4.0/metadata-stoeckius-hashing.csv

inst/extdata/2.4.0/metadata-wu-kidney.csv

inst/extdata/2.4.0/metadata-zilionis-lung.csv

inst/extdata/2.6.0/metadata-bacher-tcell.csv

inst/extdata/2.6.0/metadata-bhaduri-organoid.csv

inst/extdata/2.6.0/metadata-bunis-hspc.csv

inst/extdata/2.6.0/metadata-darmanis-brain.csv

inst/extdata/2.6.0/metadata-ernst-spermatogenesis.csv

inst/extdata/2.6.0/metadata-fletcher-olfactory.csv

inst/extdata/2.6.0/metadata-giladi-hsc.csv

inst/extdata/2.6.0/metadata-he-organ-atlas.csv

inst/extdata/2.6.0/metadata-jessa-brain.csv

inst/extdata/2.6.0/metadata-nowakowski-cortex.csv

inst/extdata/2.6.0/metadata-pollen-glia.csv

inst/extdata/2.6.0/metadata-zeisel-nervous.csv

inst/extdata/2.6.0/metadata-zhao-immune-liver.csv

inst/extdata/2.6.0/metadata-zhong-prefrontal.csv

inst/extdata/2.8.0/metadata-ledergor-myeloma.csv

inst/extdata/manifest.csv

longtests/testthat.R longtests/testthat/test-bacher-tcell.R longtests/testthat/test-bhaduri-organoid.R longtests/testthat/test-bunis-hspc.R longtests/testthat/test-darmanis-brain.R longtests/testthat/test-ernst-spermatogenesis.R longtests/testthat/test-fletcher-olfactory.R longtests/testthat/test-giladi-hsc.R longtests/testthat/test-he-organ-atlas.R longtests/testthat/test-jessa-brain.R longtests/testthat/test-ledergor-myeloma.R longtests/testthat/test-nowakowski-cortex.R longtests/testthat/test-pollen-glia.R longtests/testthat/test-zeisel-nervous.R longtests/testthat/test-zhao-immune-liver.R longtests/testthat/test-zhong-prefrontal.R man/AztekinTailData.Rd man/BachMammaryData.Rd man/BacherTCellData.Rd man/BaronPancreasData.Rd man/BhaduriOrganoidData.Rd man/BuettnerESCData.Rd man/BunisHSPCData.Rd man/CampbellBrainData.Rd man/ChenBrainData.Rd man/DarmanisBrainData.Rd man/ERCCSpikeInConcentrations.Rd man/ErnstSpermatogenesisData.Rd man/FletcherOlfactoryData.Rd man/GiladiHSCData.Rd man/GrunHSCData.Rd man/GrunPancreasData.Rd man/HeOrganAtlasData.Rd man/HermannSpermatogenesisData.Rd man/HuCortexData.Rd man/JessaBrainData.Rd man/KolodziejczykESCData.Rd man/KotliarovPBMCData.Rd man/LaMannoBrainData.Rd man/LawlorPancreasData.Rd man/LedergorMyelomaData.Rd man/LengESCData.Rd man/LunSpikeInData.Rd man/MacoskoRetinaData.Rd man/MairPBMCData.Rd man/MarquesBrainData.Rd man/MessmerESCData.Rd man/MuraroPancreasData.Rd man/NestorowaHSCData.Rd man/NowakowskiCortexData.Rd man/PaulHSCData.Rd man/PollenGliaData.Rd man/ReprocessedData.Rd man/RichardTCellData.Rd man/RomanovBrainData.Rd man/SegerstolpePancreasData.Rd man/ShekharRetinaData.Rd man/StoeckiusHashingData.Rd man/TasicBrainData.Rd man/UsoskinBrainData.Rd man/WuKidneyData.Rd man/XinPancreasData.Rd man/ZeiselBrainData.Rd man/ZeiselNervousData.Rd man/ZhaoImmuneLiverData.Rd man/ZhongPrefrontalData.Rd man/ZilionisLungData.Rd man/countErccMolecules.Rd man/fetchDataset.Rd man/listDatasets.Rd man/listVersions.Rd man/polishDataset.Rd man/reexports.Rd man/saveDataset.Rd man/scRNAseq-package.Rd man/searchDatasets.Rd man/surveyDatasets.Rd

scripts/.gitignore

scripts/aztekin-tail-2019/2023-12-14.Rmd scripts/bach-mammary-2017/2023-12-14.Rmd scripts/bacher-tcell-2020/2023-12-21.Rmd scripts/baron-pancreas-2016/2023-12-14.Rmd scripts/bhaduri-organoid-2020/2023-12-21.Rmd scripts/buettner-esc-2015/2023-12-14.Rmd scripts/buettner-esc-2015/2024-04-18.Rmd scripts/bunis-hspc-2021/2023-12-21.Rmd scripts/campbell-brain-2017/2023-12-14.Rmd scripts/chen-brain-2017/2023-12-14.Rmd scripts/darmanis-brain-2015/2023-12-21.Rmd scripts/ercc/2023-12-20.Rmd scripts/ernst-spermatogenesis-2019/2023-12-21.Rmd scripts/fletcher-olfactory-2019/2023-12-21.Rmd scripts/giladi-hsc-2018/2023-12-21.Rmd scripts/grun-bone_marrow-2016/2023-12-14.Rmd scripts/grun-pancreas-2016/2023-12-14.Rmd scripts/he-organs-2020/2023-12-21.Rmd scripts/hu-cortex-2017/2023-12-20.Rmd scripts/jessa-brain-2019/2023-12-22.Rmd scripts/kolodziejczyk-esc-2015/2023-12-17.Rmd scripts/kotliarov-pbmc-2020/2023-12-20.Rmd scripts/kotliarov-pbmc-2020/2024-04-18.Rmd scripts/lamanno-brain-2016/2023-12-17.Rmd scripts/lawlor-pancreas-2017/2023-12-17.Rmd scripts/ledergor-myeloma-2018/2023-12-20.Rmd scripts/legacy/2023-12-18.Rmd scripts/leng-esc-2015/2023-12-18.Rmd scripts/leng-esc-2015/2024-04-18.Rmd scripts/lun-spikein-2017/2023-12-18.Rmd scripts/macosko-retina-2015/2023-12-19.Rmd scripts/mair-pbmc-2020/2023-12-20.Rmd scripts/mair-pbmc-2020/2024-04-18.Rmd scripts/marques-brain-2016/2023-12-19.Rmd scripts/messmer-esc-2019/2023-12-19.Rmd scripts/muraro-pancreas-2016/2023-12-19.Rmd scripts/nestorowa-hsc-2016/2023-12-19.Rmd scripts/nestorowa-hsc-2016/2024-04-18.Rmd scripts/nowakowski-cortex-2017/2023-12-22.Rmd scripts/paul-hsc-2015/2023-12-20.Rmd scripts/pollen-glia-2015/2023-12-22.Rmd scripts/richard-tcell-2018/2023-12-19.Rmd scripts/romanov-brain-2017/2023-12-19.Rmd scripts/segerstolpe-pancreas-2016/2023-12-19.Rmd scripts/shekhar-retina-2016/2023-12-19.Rmd scripts/splicing-demonstration-2020/2023-12-20.Rmd scripts/splicing-demonstration-2020/alignment.Rmd

scripts/splicing-demonstration-2020/ref.bib

scripts/stoeckius-hashing-2018/2023-12-20.Rmd scripts/stoeckius-hashing-2018/2024-04-18.Rmd scripts/tasic-brain-2016/2023-12-19.Rmd scripts/tasic-brain-2016/2024-04-18.Rmd scripts/usoskin-brain-2015/2023-12-19.Rmd scripts/wu-kidney-2019/2023-12-20.Rmd scripts/xin-pancreas-2016/2023-12-19.Rmd scripts/zeisel-brain-2015/2023-12-14.Rmd scripts/zeisel-nervous-2018/2023-12-22.Rmd scripts/zhao-immune-2020/2023-12-22.Rmd scripts/zhong-prefrontal-2018/2023-12-22.Rmd scripts/zilionis-lung-2019/2023-12-20.Rmd tests/testthat.R tests/testthat/test-fetchDataset.R tests/testthat/test-loading.R tests/testthat/test-polishDataset.R tests/testthat/test-saveDataset.R tests/testthat/test-uploadDirectory.R vignettes/scRNAseq.Rmd

LTLA/scRNAseq documentation built on April 24, 2024, 5:58 p.m.