Obtain the mouse brain single-cell RNA-seq data from Chen et al. (2017).
Logical scalar indicating whether the output row names should contain Ensembl identifiers.
Column metadata is provided in the same form as supplied in GSE87544. This contains the putative cell type assigned by the original authors.
ensembl=TRUE, the gene symbols are converted to Ensembl IDs in the row names of the output object.
Rows with missing Ensembl IDs are discarded, and only the first occurrence of duplicated IDs is retained.
All data are downloaded from ExperimentHub and cached for local re-use.
Specific resources can be retrieved by searching for
A SingleCellExperiment object with a single matrix of UMI counts.
Chen R et al. (2017). Single-Cell RNA-Seq reveals hypothalamic cell diversity. Cell Rep. 18, 3227-3241.
sce <- ChenBrainData()
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