fetchDataset | R Documentation |
Fetch a dataset (or its metadata) from the gypsum backend.
fetchDataset(
name,
version,
path = NA,
package = "scRNAseq",
cache = cacheDirectory(),
overwrite = FALSE,
realize.assays = FALSE,
realize.reduced.dims = TRUE,
...
)
fetchMetadata(
name,
version,
path = NA,
package = "scRNAseq",
cache = cacheDirectory(),
overwrite = FALSE
)
name |
String containing the name of the dataset. |
version |
String containing the version of the dataset. |
path |
String containing the path to a subdataset, if |
package |
String containing the name of the package. |
cache , overwrite |
Arguments to pass to |
realize.assays , realize.reduced.dims |
Logical scalars indicating whether to realize assays and reduced dimensions into memory. Dense and sparse ReloadedArray objects are converted into ordinary arrays and dgCMatrix objects, respectively. |
... |
Further arguments to pass to |
fetchDataset
returns the dataset as a SummarizedExperiment or one of its subclasses.
fetchMetadata
returns a named list of metadata for the specified dataset.
Aaron Lun
https://github.com/ArtifactDB/bioconductor-metadata-index, on the expected schema for the metadata.
saveDataset
and uploadDirectory
, to save and upload a dataset.
surveyDatasets
and listVersions
, to get possible values for name
and version
.
fetchDataset("zeisel-brain-2015", "2023-12-14")
fetchMetadata("zeisel-brain-2015", "2023-12-14")
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