CampbellBrainData: Obtain the Campbell brain data

Description Usage Arguments Details Value Author(s) References Examples

View source: R/CampbellBrainData.R

Description

Obtain the mouse brain single-cell RNA-seq data from Campbell et al. (2017).

Usage

1

Arguments

ensembl

Logical scalar indicating whether the row names of the returned object should contain Ensembl identifiers.

Details

Column metadata is provided in the same form as supplied in GSE93374. This contains information such as the diet of the mice, sex and proposed cell type for each cell.

If ensembl=TRUE, the gene symbols are converted to Ensembl IDs in the row names of the output object. Rows with missing Ensembl IDs are discarded, and only the first occurrence of duplicated IDs is retained.

All data are downloaded from ExperimentHub and cached for local re-use. Specific resources can be retrieved by searching for scRNAseq/campbell-brain.

Value

A SingleCellExperiment object with a single matrix of UMI counts.

Author(s)

Aaron Lun

References

Campbell R et al. (2017). A molecular census of arcuate hypothalamus and median eminence cell types. Nat. Neurosci. 20, 484-496.

Examples

1

LTLA/scRNAseq documentation built on Nov. 13, 2019, 12:43 p.m.