listDatasets: List all available datasets

In LTLA/scRNAseq: Collection of Public Single-Cell RNA-Seq Datasets

List all available datasets

Description

Summary information for all available datasets in the scRNAseq package.

Usage

listDatasets()

Details

A study may contribute multiple datasets if they cannot be reasonably combined (e.g., different species). The reported number of cells refers only to the dataset as it is stored in scRNAseq; this may be different to the number of cells used by the authors in their analysis, e.g., due to filtering.

Value

A DataFrame where each row corresponds to a dataset, containing the fields:

• Reference, a Markdown-formatted citation to scripts/ref.bib in the scRNAseq installation directory.

• Taxonomy, an identifier for the organism.

• Part, the part of the organism being studied.

• Number, the total number of cells in the dataset.

• Call, the relevant R call required to construct the dataset.

Author(s)

Aaron Lun

Examples

listDatasets()

LTLA/scRNAseq documentation built on June 28, 2024, 7:31 p.m.