GO_enrichment: Perform Gene Ontology (Biological Process) enrichment...

In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq

Description

Perform Gene Ontology (Biological Process) enrichment analysis of components

Usage

GO_enrichment(component, geneNumber = 250, side = "N",
  factorisation = SDAresults, database = Musculus)

Arguments

component	string; name of component e.g. "V5N" (N meaning negative size loadings)
geneNumber	integer; number of top genes to include
side	char; should negative of positive values be considered the top
factorisation	SDA factorisation object, output of SDAtools::load_results()
database	OrgDb; object of class OrgDb from the package AnnotationDbi

Value

data.frame with each row a GO term, columns Description, pvalue, Enrichment, etc

MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.