download_tss: Download location of Transcripion Start Sites from Ensembl...
In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq
Description
Usage
Arguments
Details
View source: R/functions_tss.R
Description
Download location of Transcripion Start Sites from Ensembl Biomart
Usage
1
2
download_tss(host = "http://Apr2018.archive.ensembl.org", filter = "",
filter_values = "")
Arguments
host
url; to specify which version of Ensembl to use, see biomaRt::listEnsemblArchives()
filter
charachter vector; specifies which filters to use e.g. c("external_gene_name","transcript_biotype")
filter_values
list; corresponding values of the filter e.g. list(gene_names,"protein_coding")
Details
Uses ensembl biomart to download location of Transcripion Start Sites
If there are multiple tss the best is determined by tsl, then by appris, then by length.
MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.
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Description Usage Arguments Details
View source: R/functions_tss.R
Description
Download location of Transcripion Start Sites from Ensembl Biomart
Usage
1 2 | download_tss(host = "http://Apr2018.archive.ensembl.org", filter = "",
filter_values = "")
|
Arguments
host |
url; to specify which version of Ensembl to use, see biomaRt::listEnsemblArchives() |
filter |
charachter vector; specifies which filters to use e.g. c("external_gene_name","transcript_biotype") |
filter_values |
list; corresponding values of the filter e.g. list(gene_names,"protein_coding") |
Details
Uses ensembl biomart to download location of Transcripion Start Sites If there are multiple tss the best is determined by tsl, then by appris, then by length.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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