princurve_bootstrap: Bootstrap Principal Curve Analysis

In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq

Description

Bootstrap Principal Curve Analysis

Usage

princurve_bootstrap(input, df_start = 4, df_end = 10, plot = TRUE)

Arguments

input	numeric matrix; a matrix of points in arbitrary dimension, e.g. column for PC1/Tsne1 and column for PC2/Tsne2
df_start	integer; degrees of freedom to start at
df_end	integer; degrees of freedom to finish at
plot	logical; if TRUE (default) curve is plotted at end of each df iteration

Details

A principal curve is fitted first with df = df_start, then again for df_start+1 iteratively until reaching df_end

Value

list object containing results of each sucessive princurve

MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.