print_loadings_scores: Plot gene loadings with cell scores underneath
In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq
Description
Usage
Arguments
Value
Description
Plot gene loadings with cell scores underneath
Usage
1
2
print_loadings_scores(i, factorisation = SDAresults,
gene_locations = gene_annotations, max.items = 30)
Arguments
i
integer or string; number or name of component in 'SDAresults' object
factorisation
SDA factorisation object, output of SDAtools::load_results()
gene_locations
ouput of SDAtools::load_gene_locations()
max.items
integer; number of genes to label in loadings plot
Value
ggplot2 object
MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.
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Description Usage Arguments Value
Description
Plot gene loadings with cell scores underneath
Usage
1 2 | print_loadings_scores(i, factorisation = SDAresults,
gene_locations = gene_annotations, max.items = 30)
|
Arguments
i |
integer or string; number or name of component in 'SDAresults' object |
factorisation |
SDA factorisation object, output of SDAtools::load_results() |
gene_locations |
ouput of SDAtools::load_gene_locations() |
max.items |
integer; number of genes to label in loadings plot |
Value
ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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