go_volcano_plot: Volcano plot of gene ontology enrichment resultd
In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq
Description
Usage
Arguments
Value
Description
Volcano plot of gene ontology enrichment resultd
Usage
1
2
go_volcano_plot(data = GO_data, component = "V5N", top_n = 30,
label_size = 3, OR_threshold = 1)
Arguments
data
R object; GO results
component
string; name of component e.g. "V5N" (N meaning negative size loadings)
top_n
integer; how many GO terms to label
label_size
numeric; size of GO term labels
OR_threshold
numeric; threshold on odds ratio of GO terms to label (applied after top_n)
Value
ggplot2 object
MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.
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Description Usage Arguments Value
Description
Volcano plot of gene ontology enrichment resultd
Usage
1 2 | go_volcano_plot(data = GO_data, component = "V5N", top_n = 30,
label_size = 3, OR_threshold = 1)
|
Arguments
data |
R object; GO results |
component |
string; name of component e.g. "V5N" (N meaning negative size loadings) |
top_n |
integer; how many GO terms to label |
label_size |
numeric; size of GO term labels |
OR_threshold |
numeric; threshold on odds ratio of GO terms to label (applied after top_n) |
Value
ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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