ptorder: Order Components by PseudoTime
In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq
Description
Usage
Arguments
Details
Value
View source: R/functions_ordering.R
Description
Order Components by PseudoTime
Usage
1
2
ptorder(component, cell_metadata = cell_data, threshold = 2,
side = "both")
Arguments
component
string; Component name as in cell_data
cell_metadata
data.table with columns cell, PseudoTime, and components V1, V2 etc.
threshold
numeric; value below which cells will not count towards the ordering of the component
Details
The order is determined by using a weighted mean of the pseudotime values, where the weights are the cell scores of
the component. Only cells with an absolute cell score of greater than 2 contribute to the mean.
Value
weighted mean of pseudotime for a given component
MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.
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Description Usage Arguments Details Value
View source: R/functions_ordering.R
Description
Order Components by PseudoTime
Usage
1 2 | ptorder(component, cell_metadata = cell_data, threshold = 2,
side = "both")
|
Arguments
component |
string; Component name as in cell_data |
cell_metadata |
data.table with columns cell, PseudoTime, and components V1, V2 etc. |
threshold |
numeric; value below which cells will not count towards the ordering of the component |
Details
The order is determined by using a weighted mean of the pseudotime values, where the weights are the cell scores of the component. Only cells with an absolute cell score of greater than 2 contribute to the mean.
Value
weighted mean of pseudotime for a given component
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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