get_component_motifs: For an SDA component, find motifs /de novo/

In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq

Description

For an SDA component, find motifs /de novo/

Usage

get_component_motifs(component, positive, topn = 250, random = FALSE)

Arguments

component	numeric; component number in SDAresults$loadings[[1]]
positive	logical; should we look for motifs in the genes with positive loadings or negative
random	logical; if TRUE (default: FALSE) 250 random genes are used

Details

Requires tss_seqs_s and SDAresults (from SDA load_results) to be loaded For an SDA

Value

Will save pdf of motifs found, and return list of motifs found

MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.