gene_expression_pseudotime: Create long data table of gene expression for a subset of...
In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq
Description
Usage
Arguments
Value
Description
Create long data table of gene expression for a subset of genes with pseudotimes
Usage
1
2
gene_expression_pseudotime(genes, factorisation = SDAresults,
cell_metadata = cell_data)
Arguments
genes
character vector; Gene Symbols of the genes to compute imputed expression for
factorisation
SDA factorisation object, output of SDAtools::load_results()
cell_metadata
data.table with columns cell, Tsne1_QC1, Tsne2_QC2, and components V1, V2 etc.
Value
A data.table with variables cell (the cell barcode), PseudoTime, Tsne coordinates,
value (containing imputed expression values), and Gene (a string indicator for which gene each value is for)
MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.
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Description Usage Arguments Value
Description
Create long data table of gene expression for a subset of genes with pseudotimes
Usage
1 2 | gene_expression_pseudotime(genes, factorisation = SDAresults,
cell_metadata = cell_data)
|
Arguments
genes |
character vector; Gene Symbols of the genes to compute imputed expression for |
factorisation |
SDA factorisation object, output of SDAtools::load_results() |
cell_metadata |
data.table with columns cell, Tsne1_QC1, Tsne2_QC2, and components V1, V2 etc. |
Value
A data.table with variables cell (the cell barcode), PseudoTime, Tsne coordinates, value (containing imputed expression values), and Gene (a string indicator for which gene each value is for)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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