print_raw_tsne: Print tsne based on raw expression rather than SDA scores
In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq
Description
Usage
Arguments
Value
View source: R/functions_single_cell.R
Description
Print tsne based on raw expression rather than SDA scores
Usage
1
2
print_raw_tsne(gene, expression_matrix = data,
cell_metadata = cell_data)
Arguments
gene
string; gene symbol, of which expression values will be used to colour points (cells)
expression_matrix
cell by gene expressionn matrix
cell_metadata
data.table with columns Tsne1, Tsne2, and PCs
Value
ggplot2 object
MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.
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Description Usage Arguments Value
View source: R/functions_single_cell.R
Description
Print tsne based on raw expression rather than SDA scores
Usage
1 2 | print_raw_tsne(gene, expression_matrix = data,
cell_metadata = cell_data)
|
Arguments
gene |
string; gene symbol, of which expression values will be used to colour points (cells) |
expression_matrix |
cell by gene expressionn matrix |
cell_metadata |
data.table with columns Tsne1, Tsne2, and PCs |
Value
ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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