clustered_heatmap: Clustered heatmap (partially deprecated)
In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq

Clustered heatmap (partially deprecated)

1
2
3

clustered_heatmap(cell_metadata = cell_data, name,
  annotation.col = NULL, colv_order = NULL, col_lab = NULL,
  row_text_size = 0.5)

`cell_metadata`	data.table; cell_data, with subset of gene columns
`name`	string; title
`annotation.col`	data.table; subset of cell_data, passed to annCol of aheatmap
`colv_order`	passed to Colv of aheatmap
`col_lab`	passed to labCol of aheatmap
`row_text_size`	passed to cexRow of aheatmap

requires PCA object to be bound to cell_metadata

aheatmap plot

MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.

MyersGroup/testisAtlas index

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description