gene_list: Print list of genes in component and their annotations

In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq

Description

Print list of genes in component and their annotations

Usage

gene_list(i, n = 100, factorisation = SDAresults,
  annotations = gene_annotations, order = "absolute")

Arguments

i	integer or string; number or name of component in 'SDAresults' object
n	integer; number of genes to include in the list, default=100
factorisation	SDA factorisation object, output of SDAtools::load_results()
annotations	data.table with columns gene_symbol, fold_enrichment_fantom, fold_enrichment_gtex, Human_Orthologue, Inferitility_Gene, chromosome_name and start_position, created in 24_Gene-annotations.Rmd
order;	order of ouput list by loading, "absolute", "decreasing" or "increasing"

Details

See also get_top_genes() for a simpler function

Value

print of data.table

MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.