imputed_vs_raw: Plot gene expression through pseudotime (Raw & Imputed)

In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq

Description

Plot gene expression through pseudotime (Raw & Imputed)

Usage

imputed_vs_raw(genes, cell_metadata = cell_data,
  factorisation = SDAresults, expression_matrix = data, facet = T)

Arguments

genes	character vector; Gene Symbols of the genes to compute imputed expression for
cell_metadata	data.table with columns cell, Tsne1_QC1, Tsne2_QC2, and components V1, V2 etc.
factorisation	SDA factorisation object, output of SDAtools::load_results()
expression_matrix	matrix; rows=cells, columns=genes, unimputed but normalised (scaled) expression values
facet	logical; if TRUE (default) each column is a faceted plot, if FALSE just two plots are returned imputed & raw

Value

A ggplot2 object

MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.