R/curatedPCaData-package.R

In Syksy/curatedPCaData: Curated Prostate Cancer Data

#' curatedPCaData
#'
#' The package curatedPCaData offers a selection of annotated
#' prostate cancer datasets featuring multiple omics, manually
#' curated metadata, and derived downstream variables. The studies
#' are offered as MultiAssayExperiment (MAE) objects via ExperimentHub,
#' and comprise of clinical characteristics tied to gene expression,
#' copy number alteration and somatic mutation data. Further, downstream
#' features computed from these multi-omics data are offered. Multiple
#' vignettes help grasp characteristics of the various studies and provide
#' example exploratory and meta-analysis of leveraging the multiple
#' studies provided here-in.
#'
#' @docType package
#' @name curatedPCaData
#' @keywords internal
#' @import S4Vectors
#' @import MultiAssayExperiment
#' @import RaggedExperiment
#' @import ExperimentHub
#' @import reshape2
#' @importFrom methods slot is
#' @importFrom utils read.table data read.csv
#' @importFrom rlang .data
#' @importFrom stats median
#' @importFrom AnnotationHub query
"_PACKAGE"

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