parse_gtf: Parse a GFF/GTF file as 'GRangesList' of exons

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Parse a GFF/GTF file as GRangesList of exons

Description

Parse a GFF/GTF file as GRangesList of exons

Usage

parse_gtf(file, ...)

Arguments

file	path to a GFF or GTF file (See makeTxDbFromGFF))
...	other options passed to file path to makeTxDbFromGFF)

Value

A GRangesList of exons grouped by transcripts

Examples

gff_file <- system.file("extdata","GFF3_files","a.gff3",package="splice2neo")

parse_gtf(gff_file)

TRON-Bioinformatics/splice2neo documentation built on Nov. 9, 2024, 5:28 p.m.