parse_irfinder_txt: Imports "IRFinder-IR-nondir.txt" from IRFinder short mode and...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Imports "IRFinder-IR-nondir.txt" from IRFinder short mode and transforms the raw output into standardized junction output format.

Description

Imports "IRFinder-IR-nondir.txt" from IRFinder short mode and transforms the raw output into standardized junction output format.

Usage

parse_irfinder_txt(path, warnings = FALSE, irratio = 0.1, cnn = FALSE)

Arguments

path	The path to "IR-(non)dir-(val).txt"
warnings	Filter out IR calls with Warnings
irratio	Filter out IR calls with IRRatio <= this parameter
cnn	Use CNN validated table as input instead of standard output table

Value

A tibble in standardized junction format

path <- system.file("extdata", "", package = "splice2neo") ir_juncs <- parse_irfinder_txt(path) ir_juncs

TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.