parse_pangolin: Parse VCF output file from pangolin as table
In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations
View source: R/parse_pangolin.R
parse_pangolin R Documentation
Parse VCF output file from pangolin as table
Description
requires the vcfR package.
Usage
parse_pangolin(vcf_file)
Arguments
vcf_file
path to a single VCF file, the output of pangolin
Value
a tibble with one row per variant
annotation. Each input variant can have multiple annotations.
Examples
pangolin_file <- system.file("extdata", "spliceai_output.pangolin.vcf", package = "splice2neo")
parse_pangolin(pangolin_file)
TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.
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View source: R/parse_pangolin.R
| parse_pangolin | R Documentation |
Parse VCF output file from pangolin as table
Description
requires the vcfR package.
Usage
parse_pangolin(vcf_file)
Arguments
vcf_file |
path to a single VCF file, the output of pangolin |
Value
a tibble with one row per variant annotation. Each input variant can have multiple annotations.
Examples
pangolin_file <- system.file("extdata", "spliceai_output.pangolin.vcf", package = "splice2neo")
parse_pangolin(pangolin_file)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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