spladder_transform: Imports SplAdder output from a given path and transforms it...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Imports SplAdder output from a given path and transforms it into standardized junction format. Results from one patients should be stored per folder.

Description

Imports SplAdder output from a given path and transforms it into standardized junction format. Results from one patients should be stored per folder.

Usage

spladder_transform(path)

Arguments

path	The path to a folder with SplAdder output

Value

A tibble in standardized junction format, combining all alternative splicing classes that are covered by SplAdder

Examples

path <-  system.file("extdata", "", package = "splice2neo")
spladder_juncs <- spladder_transform(path)
spladder_juncs

TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.