suppa_import: Imports SUPPA2 output from a given path with "_strict.ioe"...
In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations
suppa_import R Documentation
Imports SUPPA2 output from a given path with "_strict.ioe" files.
The results for one patient should be stored in the given path. Please note
that AF and AL events are not supported.
Description
Imports SUPPA2 output from a given path with "_strict.ioe" files.
The results for one patient should be stored in the given path. Please note
that AF and AL events are not supported.
Usage
suppa_import(path)
Arguments
path
The path to a folder with SUPPA2 output. This folder must contain the "_strict.ioe"
files for the alternative splicing type of interest.
Value
A list with tibbles. Each tibble is a SUPPA2 output for "A5SS",
"A3SS", "cassette_exon", "intron_retention", "mutex_exons".
TRON-Bioinformatics/splice2neo documentation built on July 1, 2024, 7:57 p.m.
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| suppa_import | R Documentation |
Imports SUPPA2 output from a given path with "_strict.ioe" files. The results for one patient should be stored in the given path. Please note that AF and AL events are not supported.
Description
Imports SUPPA2 output from a given path with "_strict.ioe" files. The results for one patient should be stored in the given path. Please note that AF and AL events are not supported.
Usage
suppa_import(path)
Arguments
path |
The path to a folder with SUPPA2 output. This folder must contain the "_strict.ioe" files for the alternative splicing type of interest. |
Value
A list with tibbles. Each tibble is a SUPPA2 output for "A5SS", "A3SS", "cassette_exon", "intron_retention", "mutex_exons".
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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