suppa_transform: Imports SUPPA2 output from a given path and transforms it...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Imports SUPPA2 output from a given path and transforms it into standardized junction format. Results from one patients should be stored per folder. Please note that alternative first exons (AF) and alternative last exons (AL) are not supported.

Description

• GitHub: https://github.com/comprna/SUPPA

• Paper: https://doi.org/10.1186/s13059-018-1417-1

Usage

suppa_transform(path)

Arguments

path	The path to a folder with SUPPA2 output

Value

A tibble in standardized junction format, combining all alternative splicing classes that are covered by SUPPA2

TRON-Bioinformatics/splice2neo documentation built on July 1, 2024, 7:57 p.m.