transform_for_requant: Creates a table with context sequences for re-quantification...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Creates a table with context sequences for re-quantification analysis with EasyQuant.

Description

Creates a table with context sequences for re-quantification analysis with EasyQuant.

Usage

transform_for_requant(df)

Arguments

df	A data.frame with splice junctions in rows and at least the columns: cts_id hash id for a context sequence cts_seq The transcript context sequence. cts_junc_pos The position of the junction within the context sequence

Value

A tibble that can be used for re-quantification with EasyQuant This tibble has the columns

• name: Name of the input sequence.

• sequence: The context sequence that will be requantified.

• position: The position of the junction within the context sequence.

TRON-Bioinformatics/splice2neo documentation built on Nov. 9, 2024, 5:28 p.m.