transform_star_sj: Transforms STAR intermediate table into standardized junction...
In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations
transform_star_sj R Documentation
Transforms STAR intermediate table into standardized junction format
Description
Transforms STAR intermediate table into standardized junction format
Usage
transform_star_sj(tib)
Arguments
tib
STAR *SJ.out.tab as tibble
Value
A tibble in standardized junction format
Junctions without strand annotation "*" are filtered out.
Examples
path <- system.file("extdata", "test_star_SJ.out.tab", package = "splice2neo")
star_raw <- splice2neo:::import_star_sj(path)
splice2neo:::transform_star_sj(star_raw)
TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.
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| transform_star_sj | R Documentation |
Transforms STAR intermediate table into standardized junction format
Description
Transforms STAR intermediate table into standardized junction format
Usage
transform_star_sj(tib)
Arguments
tib |
STAR *SJ.out.tab as tibble |
Value
A tibble in standardized junction format
Junctions without strand annotation "*" are filtered out.
Examples
path <- system.file("extdata", "test_star_SJ.out.tab", package = "splice2neo")
star_raw <- splice2neo:::import_star_sj(path)
splice2neo:::transform_star_sj(star_raw)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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