unique_mut_junc: Filter junctions for unique combinations of mutation,...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Filter junctions for unique combinations of mutation, transcript, and junctions.

Description

Filters for unqiue mut_id,junc_id, tx_id. If there are multiple effects (DL/AL) predicted to lead to the same combination of mut_id, junc_id, tx_id, only the effect with the maximal score is returned.

Usage

unique_mut_junc(junc_data)

Arguments

junc_data

A tibble with junctions. The tibble should contain the columns mut_id, tx_id, junc_id and score and might have individual sets of other tool/source specific columns. This tibble can be created with annotate_mut_effect().

Value

A filtered tibble with unique junctions based on the columns mut_id, tx_id, junc_id. The event with the maximal score is kept.

TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.