Files in USGS-R/streamMetabolizer
Models for Estimating Aquatic Photosynthesis and Respiration

.Rbuildignore
.Rinstignore
.github/.gitignore
.github/ISSUE_TEMPLATE.md
.gitignore
CODE_OF_CONDUCT.md CONTRIBUTING.md
DESCRIPTION
DISCLAIMER.md LICENSE.md
NAMESPACE
NEWS.md R/01-onLoad.R R/calc_DO_deficit.R R/calc_DO_sat.R R/calc_air_pressure.R R/calc_bins.R R/calc_depth.R R/calc_is_daytime.R R/calc_light.R R/calc_light_merged.R R/calc_solar_insolation.R R/calc_solar_time.R R/calc_sun_rise_set.R R/calc_velocity.R R/convert_PAR_to_SW.R R/convert_UTC_to_localtime.R R/convert_UTC_to_solartime.R R/convert_date_to_doyhr.R R/convert_k600_to_kGAS.R R/create_calc_DO.R R/create_calc_NLL.R R/create_calc_dDOdt.R R/data_metab.R R/deprecated.R R/load_french_creek.R R/load_french_creek_std.R R/load_spring_creek.R R/lookup_timezone.R R/lookup_usgs_elevation.R R/metab.R R/metab_Kmodel.R R/metab_bayes.R R/metab_inputs.R R/metab_mle.R R/metab_model-class.R R/metab_model.get_param_names.R R/metab_model.get_params.R R/metab_model.predict_DO.R R/metab_model.predict_metab.R R/metab_model.show.R R/metab_model_interface.R R/metab_night.R R/metab_sim.R R/mm_check_mcmc_file.R R/mm_data.R R/mm_filter_dates.R R/mm_filter_hours.R R/mm_filter_valid_days.R R/mm_generate_mcmc_file.R R/mm_get_timestep.R R/mm_is_valid_day.R R/mm_locate_filename.R R/mm_model_by_ply.R R/mm_model_by_ply_prototype.R R/mm_name.R R/mm_parse_name.R R/mm_predict_DO_1ply.R R/mm_predict_metab_1ply.R R/mm_sd_to_ci.R R/mm_valid_names.R R/mm_validate_data.R R/mm_validate_name.R R/plot_DO_preds.R R/plot_distribs.R R/plot_metab_preds.R R/revise.R R/specs-class.R R/specs.R R/streamMetabolizer-deprecated.R R/streamMetabolizer.R R/zz_build_docs.R README.Rmd README.md
_pkgdown.yml
code.json
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/CONTRIBUTING.html
docs/DISCLAIMER.html
docs/ISSUE_TEMPLATE.html
docs/LICENSE.html
docs/articles/data_prep.html
docs/articles/data_prep_files/figure-html/viz_inputs_DO-1.png
docs/articles/data_prep_files/figure-html/viz_inputs_other-1.png
docs/articles/get_started.html
docs/articles/get_started_files/figure-html/bayes_pdo_fig-1.png
docs/articles/get_started_files/figure-html/bayes_pred_fig-1.png
docs/articles/get_started_files/figure-html/unnamed-chunk-3-1.png
docs/articles/gpp_er_eqs.html
docs/articles/gpp_er_eqs_files/figure-html/unnamed-chunk-7-1.png
docs/articles/gpp_er_eqs_files/figure-html/unnamed-chunk-9-1.png
docs/articles/gpp_er_eqs_files/figure-html/unnamed-chunk-9-2.png
docs/articles/index.html
docs/articles/installation.html
docs/articles/model_structures.html
docs/articles/models_bayes.html
docs/articles/models_mle.html
docs/articles/models_mle_files/figure-html/plot_metab1-1.png
docs/articles/models_mle_files/figure-html/plot_metab2-1.png
docs/articles/ode_methods.html
docs/articles/ode_methods_files/figure-html/unnamed-chunk-8-1.png
docs/articles/ode_methods_files/figure-html/unnamed-chunk-9-1.png
docs/articles/simulations.html
docs/articles/simulations_files/figure-html/unnamed-chunk-11-1.png
docs/articles/simulations_files/figure-html/unnamed-chunk-11-2.png
docs/articles/simulations_files/figure-html/unnamed-chunk-13-1.png
docs/articles/simulations_files/figure-html/unnamed-chunk-13-2.png
docs/articles/simulations_files/figure-html/unnamed-chunk-14-1.png
docs/articles/simulations_files/figure-html/unnamed-chunk-14-2.png
docs/articles/simulations_files/figure-html/unnamed-chunk-17-1.png
docs/articles/simulations_files/figure-html/unnamed-chunk-21-1.png
docs/articles/simulations_files/figure-html/unnamed-chunk-22-1.png
docs/articles/simulations_files/figure-html/unnamed-chunk-27-1.png
docs/authors.html
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.2.2/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Kmodel_aggregate_day.html
docs/reference/Kmodel_allply.html
docs/reference/Rplot001.png
docs/reference/add_specs_class.html
docs/reference/bayes_1ply.html
docs/reference/bayes_allply.html
docs/reference/calc_DO_deficit.html
docs/reference/calc_DO_sat.html
docs/reference/calc_air_pressure.html
docs/reference/calc_bins.html
docs/reference/calc_declination_angle.html
docs/reference/calc_depth.html
docs/reference/calc_hour_angle.html
docs/reference/calc_is_daytime.html
docs/reference/calc_light.html
docs/reference/calc_light_merged.html
docs/reference/calc_solar_insolation.html
docs/reference/calc_solar_time.html
docs/reference/calc_sun_rise_set.html
docs/reference/calc_velocity.html
docs/reference/calc_zenith_angle.html
docs/reference/compress_msgs.html
docs/reference/convert_PAR_to_SW.html
docs/reference/convert_SW_to_PAR.html
docs/reference/convert_UTC_to_localtime.html
docs/reference/convert_UTC_to_solartime.html
docs/reference/convert_date_to_doyhr.html
docs/reference/convert_doyhr_to_date.html
docs/reference/convert_k600_to_kGAS.html
docs/reference/convert_kGAS_to_k600.html
docs/reference/convert_localtime_to_UTC.html
docs/reference/convert_solartime_to_UTC.html
docs/reference/create_calc_DO.html
docs/reference/create_calc_NLL.html
docs/reference/create_calc_dDOdt.html
docs/reference/data_metab.html
docs/reference/define_pkg_env.html
docs/reference/format_mcmc_mat_nosplit.html
docs/reference/format_mcmc_mat_split.html
docs/reference/get_data.html
docs/reference/get_data_daily.html
docs/reference/get_fit.html
docs/reference/get_fitting_time.html
docs/reference/get_info.html
docs/reference/get_log.html
docs/reference/get_mcmc.html
docs/reference/get_mcmc_data.html
docs/reference/get_param_names.html
docs/reference/get_params.html
docs/reference/get_specs.html
docs/reference/get_version.html
docs/reference/index.html
docs/reference/load_french_creek.html
docs/reference/load_french_creek_std.html
docs/reference/load_french_creek_std_mle.html
docs/reference/load_spring_creek.html
docs/reference/lookup_google_timezone.html
docs/reference/lookup_timezone.html
docs/reference/lookup_usgs_elevation.html
docs/reference/metab.html
docs/reference/metab_Kmodel-class.html
docs/reference/metab_Kmodel.html
docs/reference/metab_bayes-class.html
docs/reference/metab_bayes.html
docs/reference/metab_inputs.html
docs/reference/metab_mle-class.html
docs/reference/metab_mle.html
docs/reference/metab_model-class.html
docs/reference/metab_model.html
docs/reference/metab_model_interface.html
docs/reference/metab_night-class.html
docs/reference/metab_night.html
docs/reference/metab_night_predict_1ply.html
docs/reference/metab_sim-class.html
docs/reference/metab_sim.html
docs/reference/mle_1ply.html
docs/reference/mm_check_mcmc_file.html
docs/reference/mm_check_mcmc_files.html
docs/reference/mm_data.html
docs/reference/mm_filter_dates.html
docs/reference/mm_filter_hours.html
docs/reference/mm_filter_valid_days.html
docs/reference/mm_generate_mcmc_file.html
docs/reference/mm_generate_mcmc_files.html
docs/reference/mm_get_timestep.html
docs/reference/mm_is_valid_day.html
docs/reference/mm_locate_filename.html
docs/reference/mm_model_by_ply.html
docs/reference/mm_model_by_ply_prototype.html
docs/reference/mm_name.html
docs/reference/mm_parse_name.html
docs/reference/mm_predict_DO_1ply.html
docs/reference/mm_predict_metab_1ply.html
docs/reference/mm_sd_to_ci.html
docs/reference/mm_valid_names.html
docs/reference/mm_validate_data.html
docs/reference/mm_validate_name.html
docs/reference/nightreg_1ply.html
docs/reference/plot_DO_preds.html
docs/reference/plot_distribs.html
docs/reference/plot_metab_preds.html
docs/reference/predict_DO.html
docs/reference/predict_metab.html
docs/reference/predict_metab.metab_Kmodel.html
docs/reference/prepdata_Kmodel.html
docs/reference/prepdata_bayes.html
docs/reference/pretty_print_ddat.html
docs/reference/print.logs_metab.html
docs/reference/print.specs.html
docs/reference/print_specs.html
docs/reference/revise.html
docs/reference/runstan_bayes.html
docs/reference/show-metab_model-method.html
docs/reference/show-specs-method.html
docs/reference/sim_Kb.html
docs/reference/sim_get_par.html
docs/reference/sim_pred_Kb.html
docs/reference/specs.html
docs/reference/streamMetabolizer-deprecated.html
docs/reference/streamMetabolizer.html
docs/reference/summarize_stopwarn_msgs.html
docs/reference/to_degrees.html
docs/reference/to_radians.html
docs/reference/unitted_deprecate_warn.html
docs/reference/zz_build_docs.html
docs/reference/zz_tabular.html
docs/search.json
docs/sitemap.xml
inst/CITATION
inst/doc/data_prep.R inst/doc/data_prep.Rmd
inst/doc/data_prep.html
inst/doc/get_started.R inst/doc/get_started.Rmd
inst/doc/get_started.html
inst/doc/gpp_er_eqs.R inst/doc/gpp_er_eqs.Rmd
inst/doc/gpp_er_eqs.html
inst/doc/ode_methods.R inst/doc/ode_methods.Rmd
inst/doc/ode_methods.html
inst/doc/simulations.R inst/doc/simulations.Rmd
inst/doc/simulations.html
inst/extdata/KfQ_procobserr.jags
inst/extdata/b_np_pcpi_eu_ko_v1.stan
inst/extdata/b_np_pcpi_eu_ko_v2.stan
inst/extdata/brandywine.rds
inst/extdata/french.csv
inst/extdata/spring14.csv
inst/models/b_Kb0_oi_eu_plrckm.stan
inst/models/b_Kb0_oi_eu_plrcko.stan
inst/models/b_Kb0_oi_eu_psrckm.stan
inst/models/b_Kb0_oi_eu_psrcko.stan
inst/models/b_Kb0_oi_tr_plrckm.stan
inst/models/b_Kb0_oi_tr_plrcko.stan
inst/models/b_Kb0_oi_tr_psrckm.stan
inst/models/b_Kb0_oi_tr_psrcko.stan
inst/models/b_Kb0_oipi_eu_plrckm.stan
inst/models/b_Kb0_oipi_eu_plrcko.stan
inst/models/b_Kb0_oipi_eu_psrckm.stan
inst/models/b_Kb0_oipi_eu_psrcko.stan
inst/models/b_Kb0_oipi_tr_plrckm.stan
inst/models/b_Kb0_oipi_tr_plrcko.stan
inst/models/b_Kb0_oipi_tr_psrckm.stan
inst/models/b_Kb0_oipi_tr_psrcko.stan
inst/models/b_Kb0_oipipp_eu_plrckm.stan
inst/models/b_Kb0_oipipp_eu_plrcko.stan
inst/models/b_Kb0_oipipp_tr_plrckm.stan
inst/models/b_Kb0_oipipp_tr_plrcko.stan
inst/models/b_Kb0_oipp_eu_plrckm.stan
inst/models/b_Kb0_oipp_eu_plrcko.stan
inst/models/b_Kb0_oipp_tr_plrckm.stan
inst/models/b_Kb0_oipp_tr_plrcko.stan
inst/models/b_Kb0_pi_eu_plrckm.stan
inst/models/b_Kb0_pi_eu_plrcko.stan
inst/models/b_Kb0_pi_eu_psrckm.stan
inst/models/b_Kb0_pi_eu_psrcko.stan
inst/models/b_Kb0_pi_tr_plrckm.stan
inst/models/b_Kb0_pi_tr_plrcko.stan
inst/models/b_Kb0_pi_tr_psrckm.stan
inst/models/b_Kb0_pi_tr_psrcko.stan
inst/models/b_Kb0_pipp_eu_plrckm.stan
inst/models/b_Kb0_pipp_eu_plrcko.stan
inst/models/b_Kb0_pipp_tr_plrckm.stan
inst/models/b_Kb0_pipp_tr_plrcko.stan
inst/models/b_Kb0_pp_eu_plrckm.stan
inst/models/b_Kb0_pp_eu_plrcko.stan
inst/models/b_Kb0_pp_tr_plrckm.stan
inst/models/b_Kb0_pp_tr_plrcko.stan
inst/models/b_Kb_oi_eu_plrckm.stan
inst/models/b_Kb_oi_eu_plrcko.stan
inst/models/b_Kb_oi_eu_psrckm.stan
inst/models/b_Kb_oi_eu_psrcko.stan
inst/models/b_Kb_oi_tr_plrckm.stan
inst/models/b_Kb_oi_tr_plrcko.stan
inst/models/b_Kb_oi_tr_psrckm.stan
inst/models/b_Kb_oi_tr_psrcko.stan
inst/models/b_Kb_oipi_eu_plrckm.stan
inst/models/b_Kb_oipi_eu_plrcko.stan
inst/models/b_Kb_oipi_eu_psrckm.stan
inst/models/b_Kb_oipi_eu_psrcko.stan
inst/models/b_Kb_oipi_tr_plrckm.stan
inst/models/b_Kb_oipi_tr_plrcko.stan
inst/models/b_Kb_oipi_tr_psrckm.stan
inst/models/b_Kb_oipi_tr_psrcko.stan
inst/models/b_Kb_oipipp_eu_plrckm.stan
inst/models/b_Kb_oipipp_eu_plrcko.stan
inst/models/b_Kb_oipipp_tr_plrckm.stan
inst/models/b_Kb_oipipp_tr_plrcko.stan
inst/models/b_Kb_oipp_eu_plrckm.stan
inst/models/b_Kb_oipp_eu_plrcko.stan
inst/models/b_Kb_oipp_tr_plrckm.stan
inst/models/b_Kb_oipp_tr_plrcko.stan
inst/models/b_Kb_pi_eu_plrckm.stan
inst/models/b_Kb_pi_eu_plrcko.stan
inst/models/b_Kb_pi_eu_psrckm.stan
inst/models/b_Kb_pi_eu_psrcko.stan
inst/models/b_Kb_pi_tr_plrckm.stan
inst/models/b_Kb_pi_tr_plrcko.stan
inst/models/b_Kb_pi_tr_psrckm.stan
inst/models/b_Kb_pi_tr_psrcko.stan
inst/models/b_Kb_pipp_eu_plrckm.stan
inst/models/b_Kb_pipp_eu_plrcko.stan
inst/models/b_Kb_pipp_tr_plrckm.stan
inst/models/b_Kb_pipp_tr_plrcko.stan
inst/models/b_Kb_pp_eu_plrckm.stan
inst/models/b_Kb_pp_eu_plrcko.stan
inst/models/b_Kb_pp_tr_plrckm.stan
inst/models/b_Kb_pp_tr_plrcko.stan
inst/models/b_Kbx_oi_eu_plrckm.stan
inst/models/b_Kbx_oi_eu_plrcko.stan
inst/models/b_Kbx_oi_eu_psrckm.stan
inst/models/b_Kbx_oi_eu_psrcko.stan
inst/models/b_Kbx_oi_tr_plrckm.stan
inst/models/b_Kbx_oi_tr_plrcko.stan
inst/models/b_Kbx_oi_tr_psrckm.stan
inst/models/b_Kbx_oi_tr_psrcko.stan
inst/models/b_Kbx_oipi_eu_plrckm.stan
inst/models/b_Kbx_oipi_eu_plrcko.stan
inst/models/b_Kbx_oipi_eu_psrckm.stan
inst/models/b_Kbx_oipi_eu_psrcko.stan
inst/models/b_Kbx_oipi_tr_plrckm.stan
inst/models/b_Kbx_oipi_tr_plrcko.stan
inst/models/b_Kbx_oipi_tr_psrckm.stan
inst/models/b_Kbx_oipi_tr_psrcko.stan
inst/models/b_Kbx_oipipp_eu_plrckm.stan
inst/models/b_Kbx_oipipp_eu_plrcko.stan
inst/models/b_Kbx_oipipp_tr_plrckm.stan
inst/models/b_Kbx_oipipp_tr_plrcko.stan
inst/models/b_Kbx_oipp_eu_plrckm.stan
inst/models/b_Kbx_oipp_eu_plrcko.stan
inst/models/b_Kbx_oipp_tr_plrckm.stan
inst/models/b_Kbx_oipp_tr_plrcko.stan
inst/models/b_Kbx_pi_eu_plrckm.stan
inst/models/b_Kbx_pi_eu_plrcko.stan
inst/models/b_Kbx_pi_eu_psrckm.stan
inst/models/b_Kbx_pi_eu_psrcko.stan
inst/models/b_Kbx_pi_tr_plrckm.stan
inst/models/b_Kbx_pi_tr_plrcko.stan
inst/models/b_Kbx_pi_tr_psrckm.stan
inst/models/b_Kbx_pi_tr_psrcko.stan
inst/models/b_Kbx_pipp_eu_plrckm.stan
inst/models/b_Kbx_pipp_eu_plrcko.stan
inst/models/b_Kbx_pipp_tr_plrckm.stan
inst/models/b_Kbx_pipp_tr_plrcko.stan
inst/models/b_Kbx_pp_eu_plrckm.stan
inst/models/b_Kbx_pp_eu_plrcko.stan
inst/models/b_Kbx_pp_tr_plrckm.stan
inst/models/b_Kbx_pp_tr_plrcko.stan
inst/models/b_Kl0_oi_eu_plrckm.stan
inst/models/b_Kl0_oi_eu_plrcko.stan
inst/models/b_Kl0_oi_eu_psrckm.stan
inst/models/b_Kl0_oi_eu_psrcko.stan
inst/models/b_Kl0_oi_tr_plrckm.stan
inst/models/b_Kl0_oi_tr_plrcko.stan
inst/models/b_Kl0_oi_tr_psrckm.stan
inst/models/b_Kl0_oi_tr_psrcko.stan
inst/models/b_Kl0_oipi_eu_plrckm.stan
inst/models/b_Kl0_oipi_eu_plrcko.stan
inst/models/b_Kl0_oipi_eu_psrckm.stan
inst/models/b_Kl0_oipi_eu_psrcko.stan
inst/models/b_Kl0_oipi_tr_plrckm.stan
inst/models/b_Kl0_oipi_tr_plrcko.stan
inst/models/b_Kl0_oipi_tr_psrckm.stan
inst/models/b_Kl0_oipi_tr_psrcko.stan
inst/models/b_Kl0_oipipp_eu_plrckm.stan
inst/models/b_Kl0_oipipp_eu_plrcko.stan
inst/models/b_Kl0_oipipp_tr_plrckm.stan
inst/models/b_Kl0_oipipp_tr_plrcko.stan
inst/models/b_Kl0_oipp_eu_plrckm.stan
inst/models/b_Kl0_oipp_eu_plrcko.stan
inst/models/b_Kl0_oipp_tr_plrckm.stan
inst/models/b_Kl0_oipp_tr_plrcko.stan
inst/models/b_Kl0_pi_eu_plrckm.stan
inst/models/b_Kl0_pi_eu_plrcko.stan
inst/models/b_Kl0_pi_eu_psrckm.stan
inst/models/b_Kl0_pi_eu_psrcko.stan
inst/models/b_Kl0_pi_tr_plrckm.stan
inst/models/b_Kl0_pi_tr_plrcko.stan
inst/models/b_Kl0_pi_tr_psrckm.stan
inst/models/b_Kl0_pi_tr_psrcko.stan
inst/models/b_Kl0_pipp_eu_plrckm.stan
inst/models/b_Kl0_pipp_eu_plrcko.stan
inst/models/b_Kl0_pipp_tr_plrckm.stan
inst/models/b_Kl0_pipp_tr_plrcko.stan
inst/models/b_Kl0_pp_eu_plrckm.stan
inst/models/b_Kl0_pp_eu_plrcko.stan
inst/models/b_Kl0_pp_tr_plrckm.stan
inst/models/b_Kl0_pp_tr_plrcko.stan
inst/models/b_Kl_oi_eu_plrckm.stan
inst/models/b_Kl_oi_eu_plrcko.stan
inst/models/b_Kl_oi_eu_psrckm.stan
inst/models/b_Kl_oi_eu_psrcko.stan
inst/models/b_Kl_oi_tr_plrckm.stan
inst/models/b_Kl_oi_tr_plrcko.stan
inst/models/b_Kl_oi_tr_psrckm.stan
inst/models/b_Kl_oi_tr_psrcko.stan
inst/models/b_Kl_oipi_eu_plrckm.stan
inst/models/b_Kl_oipi_eu_plrcko.stan
inst/models/b_Kl_oipi_eu_psrckm.stan
inst/models/b_Kl_oipi_eu_psrcko.stan
inst/models/b_Kl_oipi_tr_plrckm.stan
inst/models/b_Kl_oipi_tr_plrcko.stan
inst/models/b_Kl_oipi_tr_psrckm.stan
inst/models/b_Kl_oipi_tr_psrcko.stan
inst/models/b_Kl_oipipp_eu_plrckm.stan
inst/models/b_Kl_oipipp_eu_plrcko.stan
inst/models/b_Kl_oipipp_tr_plrckm.stan
inst/models/b_Kl_oipipp_tr_plrcko.stan
inst/models/b_Kl_oipp_eu_plrckm.stan
inst/models/b_Kl_oipp_eu_plrcko.stan
inst/models/b_Kl_oipp_tr_plrckm.stan
inst/models/b_Kl_oipp_tr_plrcko.stan
inst/models/b_Kl_pi_eu_plrckm.stan
inst/models/b_Kl_pi_eu_plrcko.stan
inst/models/b_Kl_pi_eu_psrckm.stan
inst/models/b_Kl_pi_eu_psrcko.stan
inst/models/b_Kl_pi_tr_plrckm.stan
inst/models/b_Kl_pi_tr_plrcko.stan
inst/models/b_Kl_pi_tr_psrckm.stan
inst/models/b_Kl_pi_tr_psrcko.stan
inst/models/b_Kl_pipp_eu_plrckm.stan
inst/models/b_Kl_pipp_eu_plrcko.stan
inst/models/b_Kl_pipp_tr_plrckm.stan
inst/models/b_Kl_pipp_tr_plrcko.stan
inst/models/b_Kl_pp_eu_plrckm.stan
inst/models/b_Kl_pp_eu_plrcko.stan
inst/models/b_Kl_pp_tr_plrckm.stan
inst/models/b_Kl_pp_tr_plrcko.stan
inst/models/b_Klx_oi_eu_plrckm.stan
inst/models/b_Klx_oi_eu_plrcko.stan
inst/models/b_Klx_oi_eu_psrckm.stan
inst/models/b_Klx_oi_eu_psrcko.stan
inst/models/b_Klx_oi_tr_plrckm.stan
inst/models/b_Klx_oi_tr_plrcko.stan
inst/models/b_Klx_oi_tr_psrckm.stan
inst/models/b_Klx_oi_tr_psrcko.stan
inst/models/b_Klx_oipi_eu_plrckm.stan
inst/models/b_Klx_oipi_eu_plrcko.stan
inst/models/b_Klx_oipi_eu_psrckm.stan
inst/models/b_Klx_oipi_eu_psrcko.stan
inst/models/b_Klx_oipi_tr_plrckm.stan
inst/models/b_Klx_oipi_tr_plrcko.stan
inst/models/b_Klx_oipi_tr_psrckm.stan
inst/models/b_Klx_oipi_tr_psrcko.stan
inst/models/b_Klx_oipipp_eu_plrckm.stan
inst/models/b_Klx_oipipp_eu_plrcko.stan
inst/models/b_Klx_oipipp_tr_plrckm.stan
inst/models/b_Klx_oipipp_tr_plrcko.stan
inst/models/b_Klx_oipp_eu_plrckm.stan
inst/models/b_Klx_oipp_eu_plrcko.stan
inst/models/b_Klx_oipp_tr_plrckm.stan
inst/models/b_Klx_oipp_tr_plrcko.stan
inst/models/b_Klx_pi_eu_plrckm.stan
inst/models/b_Klx_pi_eu_plrcko.stan
inst/models/b_Klx_pi_eu_psrckm.stan
inst/models/b_Klx_pi_eu_psrcko.stan
inst/models/b_Klx_pi_tr_plrckm.stan
inst/models/b_Klx_pi_tr_plrcko.stan
inst/models/b_Klx_pi_tr_psrckm.stan
inst/models/b_Klx_pi_tr_psrcko.stan
inst/models/b_Klx_pipp_eu_plrckm.stan
inst/models/b_Klx_pipp_eu_plrcko.stan
inst/models/b_Klx_pipp_tr_plrckm.stan
inst/models/b_Klx_pipp_tr_plrcko.stan
inst/models/b_Klx_pp_eu_plrckm.stan
inst/models/b_Klx_pp_eu_plrcko.stan
inst/models/b_Klx_pp_tr_plrckm.stan
inst/models/b_Klx_pp_tr_plrcko.stan
inst/models/b_Kn0_oi_eu_plrckm.stan
inst/models/b_Kn0_oi_eu_plrcko.stan
inst/models/b_Kn0_oi_eu_psrckm.stan
inst/models/b_Kn0_oi_eu_psrcko.stan
inst/models/b_Kn0_oi_tr_plrckm.stan
inst/models/b_Kn0_oi_tr_plrcko.stan
inst/models/b_Kn0_oi_tr_psrckm.stan
inst/models/b_Kn0_oi_tr_psrcko.stan
inst/models/b_Kn0_oipi_eu_plrckm.stan
inst/models/b_Kn0_oipi_eu_plrcko.stan
inst/models/b_Kn0_oipi_eu_psrckm.stan
inst/models/b_Kn0_oipi_eu_psrcko.stan
inst/models/b_Kn0_oipi_tr_plrckm.stan
inst/models/b_Kn0_oipi_tr_plrcko.stan
inst/models/b_Kn0_oipi_tr_psrckm.stan
inst/models/b_Kn0_oipi_tr_psrcko.stan
inst/models/b_Kn0_oipipp_eu_plrckm.stan
inst/models/b_Kn0_oipipp_eu_plrcko.stan
inst/models/b_Kn0_oipipp_tr_plrckm.stan
inst/models/b_Kn0_oipipp_tr_plrcko.stan
inst/models/b_Kn0_oipp_eu_plrckm.stan
inst/models/b_Kn0_oipp_eu_plrcko.stan
inst/models/b_Kn0_oipp_tr_plrckm.stan
inst/models/b_Kn0_oipp_tr_plrcko.stan
inst/models/b_Kn0_pi_eu_plrckm.stan
inst/models/b_Kn0_pi_eu_plrcko.stan
inst/models/b_Kn0_pi_eu_psrckm.stan
inst/models/b_Kn0_pi_eu_psrcko.stan
inst/models/b_Kn0_pi_tr_plrckm.stan
inst/models/b_Kn0_pi_tr_plrcko.stan
inst/models/b_Kn0_pi_tr_psrckm.stan
inst/models/b_Kn0_pi_tr_psrcko.stan
inst/models/b_Kn0_pipp_eu_plrckm.stan
inst/models/b_Kn0_pipp_eu_plrcko.stan
inst/models/b_Kn0_pipp_tr_plrckm.stan
inst/models/b_Kn0_pipp_tr_plrcko.stan
inst/models/b_Kn0_pp_eu_plrckm.stan
inst/models/b_Kn0_pp_eu_plrcko.stan
inst/models/b_Kn0_pp_tr_plrckm.stan
inst/models/b_Kn0_pp_tr_plrcko.stan
inst/models/b_Kn_oi_eu_plrckm.stan
inst/models/b_Kn_oi_eu_plrcko.stan
inst/models/b_Kn_oi_eu_psrckm.stan
inst/models/b_Kn_oi_eu_psrcko.stan
inst/models/b_Kn_oi_tr_plrckm.stan
inst/models/b_Kn_oi_tr_plrcko.stan
inst/models/b_Kn_oi_tr_psrckm.stan
inst/models/b_Kn_oi_tr_psrcko.stan
inst/models/b_Kn_oipi_eu_plrckm.stan
inst/models/b_Kn_oipi_eu_plrcko.stan
inst/models/b_Kn_oipi_eu_psrckm.stan
inst/models/b_Kn_oipi_eu_psrcko.stan
inst/models/b_Kn_oipi_tr_plrckm.stan
inst/models/b_Kn_oipi_tr_plrcko.stan
inst/models/b_Kn_oipi_tr_psrckm.stan
inst/models/b_Kn_oipi_tr_psrcko.stan
inst/models/b_Kn_oipipp_eu_plrckm.stan
inst/models/b_Kn_oipipp_eu_plrcko.stan
inst/models/b_Kn_oipipp_tr_plrckm.stan
inst/models/b_Kn_oipipp_tr_plrcko.stan
inst/models/b_Kn_oipp_eu_plrckm.stan
inst/models/b_Kn_oipp_eu_plrcko.stan
inst/models/b_Kn_oipp_tr_plrckm.stan
inst/models/b_Kn_oipp_tr_plrcko.stan
inst/models/b_Kn_pi_eu_plrckm.stan
inst/models/b_Kn_pi_eu_plrcko.stan
inst/models/b_Kn_pi_eu_psrckm.stan
inst/models/b_Kn_pi_eu_psrcko.stan
inst/models/b_Kn_pi_tr_plrckm.stan
inst/models/b_Kn_pi_tr_plrcko.stan
inst/models/b_Kn_pi_tr_psrckm.stan
inst/models/b_Kn_pi_tr_psrcko.stan
inst/models/b_Kn_pipp_eu_plrckm.stan
inst/models/b_Kn_pipp_eu_plrcko.stan
inst/models/b_Kn_pipp_tr_plrckm.stan
inst/models/b_Kn_pipp_tr_plrcko.stan
inst/models/b_Kn_pp_eu_plrckm.stan
inst/models/b_Kn_pp_eu_plrcko.stan
inst/models/b_Kn_pp_tr_plrckm.stan
inst/models/b_Kn_pp_tr_plrcko.stan
inst/models/b_Knx_oi_eu_plrckm.stan
inst/models/b_Knx_oi_eu_plrcko.stan
inst/models/b_Knx_oi_eu_psrckm.stan
inst/models/b_Knx_oi_eu_psrcko.stan
inst/models/b_Knx_oi_tr_plrckm.stan
inst/models/b_Knx_oi_tr_plrcko.stan
inst/models/b_Knx_oi_tr_psrckm.stan
inst/models/b_Knx_oi_tr_psrcko.stan
inst/models/b_Knx_oipi_eu_plrckm.stan
inst/models/b_Knx_oipi_eu_plrcko.stan
inst/models/b_Knx_oipi_eu_psrckm.stan
inst/models/b_Knx_oipi_eu_psrcko.stan
inst/models/b_Knx_oipi_tr_plrckm.stan
inst/models/b_Knx_oipi_tr_plrcko.stan
inst/models/b_Knx_oipi_tr_psrckm.stan
inst/models/b_Knx_oipi_tr_psrcko.stan
inst/models/b_Knx_oipipp_eu_plrckm.stan
inst/models/b_Knx_oipipp_eu_plrcko.stan
inst/models/b_Knx_oipipp_tr_plrckm.stan
inst/models/b_Knx_oipipp_tr_plrcko.stan
inst/models/b_Knx_oipp_eu_plrckm.stan
inst/models/b_Knx_oipp_eu_plrcko.stan
inst/models/b_Knx_oipp_tr_plrckm.stan
inst/models/b_Knx_oipp_tr_plrcko.stan
inst/models/b_Knx_pi_eu_plrckm.stan
inst/models/b_Knx_pi_eu_plrcko.stan
inst/models/b_Knx_pi_eu_psrckm.stan
inst/models/b_Knx_pi_eu_psrcko.stan
inst/models/b_Knx_pi_tr_plrckm.stan
inst/models/b_Knx_pi_tr_plrcko.stan
inst/models/b_Knx_pi_tr_psrckm.stan
inst/models/b_Knx_pi_tr_psrcko.stan
inst/models/b_Knx_pipp_eu_plrckm.stan
inst/models/b_Knx_pipp_eu_plrcko.stan
inst/models/b_Knx_pipp_tr_plrckm.stan
inst/models/b_Knx_pipp_tr_plrcko.stan
inst/models/b_Knx_pp_eu_plrckm.stan
inst/models/b_Knx_pp_eu_plrcko.stan
inst/models/b_Knx_pp_tr_plrckm.stan
inst/models/b_Knx_pp_tr_plrcko.stan
inst/models/b_np_oi_eu_plrckm.stan
inst/models/b_np_oi_eu_plrcko.stan
inst/models/b_np_oi_eu_psrckm.stan
inst/models/b_np_oi_eu_psrcko.stan
inst/models/b_np_oi_tr_plrckm.stan
inst/models/b_np_oi_tr_plrcko.stan
inst/models/b_np_oi_tr_psrckm.stan
inst/models/b_np_oi_tr_psrcko.stan
inst/models/b_np_oipi_eu_plrckm.stan
inst/models/b_np_oipi_eu_plrcko.stan
inst/models/b_np_oipi_eu_psrckm.stan
inst/models/b_np_oipi_eu_psrcko.stan
inst/models/b_np_oipi_tr_plrckm.stan
inst/models/b_np_oipi_tr_plrcko.stan
inst/models/b_np_oipi_tr_psrckm.stan
inst/models/b_np_oipi_tr_psrcko.stan
inst/models/b_np_oipipp_eu_plrckm.stan
inst/models/b_np_oipipp_eu_plrcko.stan
inst/models/b_np_oipipp_tr_plrckm.stan
inst/models/b_np_oipipp_tr_plrcko.stan
inst/models/b_np_oipp_eu_plrckm.stan
inst/models/b_np_oipp_eu_plrcko.stan
inst/models/b_np_oipp_tr_plrckm.stan
inst/models/b_np_oipp_tr_plrcko.stan
inst/models/b_np_pi_eu_plrckm.stan
inst/models/b_np_pi_eu_plrcko.stan
inst/models/b_np_pi_eu_psrckm.stan
inst/models/b_np_pi_eu_psrcko.stan
inst/models/b_np_pi_tr_plrckm.stan
inst/models/b_np_pi_tr_plrcko.stan
inst/models/b_np_pi_tr_psrckm.stan
inst/models/b_np_pi_tr_psrcko.stan
inst/models/b_np_pipp_eu_plrckm.stan
inst/models/b_np_pipp_eu_plrcko.stan
inst/models/b_np_pipp_tr_plrckm.stan
inst/models/b_np_pipp_tr_plrcko.stan
inst/models/b_np_pp_eu_plrckm.stan
inst/models/b_np_pp_eu_plrcko.stan
inst/models/b_np_pp_tr_plrckm.stan
inst/models/b_np_pp_tr_plrcko.stan
man-roxygen/metab_data.R man/Kmodel_aggregate_day.Rd man/Kmodel_allply.Rd man/add_specs_class.Rd man/bayes_1ply.Rd man/bayes_allply.Rd man/calc_DO_deficit.Rd man/calc_DO_sat.Rd man/calc_air_pressure.Rd man/calc_bins.Rd man/calc_declination_angle.Rd man/calc_depth.Rd man/calc_hour_angle.Rd man/calc_is_daytime.Rd man/calc_light.Rd man/calc_light_merged.Rd man/calc_solar_insolation.Rd man/calc_solar_time.Rd man/calc_sun_rise_set.Rd man/calc_velocity.Rd man/calc_zenith_angle.Rd man/compress_msgs.Rd man/convert_PAR_to_SW.Rd man/convert_SW_to_PAR.Rd man/convert_UTC_to_localtime.Rd man/convert_UTC_to_solartime.Rd man/convert_date_to_doyhr.Rd man/convert_doyhr_to_date.Rd man/convert_k600_to_kGAS.Rd man/convert_kGAS_to_k600.Rd man/convert_localtime_to_UTC.Rd man/convert_solartime_to_UTC.Rd man/create_calc_DO.Rd man/create_calc_NLL.Rd man/create_calc_dDOdt.Rd man/data_metab.Rd man/define_pkg_env.Rd man/format_mcmc_mat_nosplit.Rd man/format_mcmc_mat_split.Rd man/get_data.Rd man/get_data_daily.Rd man/get_fit.Rd man/get_fitting_time.Rd man/get_info.Rd man/get_log.Rd man/get_mcmc.Rd man/get_mcmc_data.Rd man/get_param_names.Rd man/get_params.Rd man/get_specs.Rd man/get_version.Rd man/load_french_creek.Rd man/load_french_creek_std.Rd man/load_french_creek_std_mle.Rd man/load_spring_creek.Rd man/lookup_google_timezone.Rd man/lookup_timezone.Rd man/lookup_usgs_elevation.Rd man/metab.Rd man/metab_Kmodel-class.Rd man/metab_Kmodel.Rd man/metab_bayes-class.Rd man/metab_bayes.Rd man/metab_inputs.Rd man/metab_mle-class.Rd man/metab_mle.Rd man/metab_model-class.Rd man/metab_model.Rd man/metab_model_interface.Rd man/metab_night-class.Rd man/metab_night.Rd man/metab_night_predict_1ply.Rd man/metab_sim-class.Rd man/metab_sim.Rd man/mle_1ply.Rd man/mm_check_mcmc_file.Rd man/mm_check_mcmc_files.Rd man/mm_data.Rd man/mm_filter_dates.Rd man/mm_filter_hours.Rd man/mm_filter_valid_days.Rd man/mm_generate_mcmc_file.Rd man/mm_generate_mcmc_files.Rd man/mm_get_timestep.Rd man/mm_is_valid_day.Rd man/mm_locate_filename.Rd man/mm_model_by_ply.Rd man/mm_model_by_ply_prototype.Rd man/mm_name.Rd man/mm_parse_name.Rd man/mm_predict_DO_1ply.Rd man/mm_predict_metab_1ply.Rd man/mm_sd_to_ci.Rd man/mm_valid_names.Rd man/mm_validate_data.Rd man/mm_validate_name.Rd man/nightreg_1ply.Rd man/plot_DO_preds.Rd man/plot_distribs.Rd man/plot_metab_preds.Rd man/predict_DO.Rd man/predict_metab.Rd man/predict_metab.metab_Kmodel.Rd man/prepdata_Kmodel.Rd man/prepdata_bayes.Rd man/pretty_print_ddat.Rd man/print.logs_metab.Rd man/print.specs.Rd man/print_specs.Rd man/revise.Rd man/runstan_bayes.Rd man/show-metab_model-method.Rd man/show-specs-method.Rd man/sim_Kb.Rd man/sim_get_par.Rd man/sim_pred_Kb.Rd man/specs.Rd man/streamMetabolizer-deprecated.Rd man/streamMetabolizer.Rd man/summarize_stopwarn_msgs.Rd man/to_degrees.Rd man/to_radians.Rd man/unitted_deprecate_warn.Rd man/zz_build_docs.Rd man/zz_tabular.Rd tests/testthat.R tests/testthat/helper-libs.R tests/testthat/helper-rmse_DO.R tests/testthat/helper-save_load.R tests/testthat/test-calc_DO.R tests/testthat/test-calc_depth.R tests/testthat/test-calc_light.R tests/testthat/test-convert.R tests/testthat/test-distribs.R tests/testthat/test-french.R tests/testthat/test-get_params.R tests/testthat/test-hierarchy.R tests/testthat/test-metab-class.R tests/testthat/test-metab_Kmodel.R tests/testthat/test-metab_bayes.R tests/testthat/test-metab_helpers.R tests/testthat/test-metab_mle.R tests/testthat/test-metab_night.R tests/testthat/test-metab_sim.R tests/testthat/test-mm_name.R tests/testthat/test-model_by_ply.R tests/testthat/test-predict.R vignettes/data_prep.Rmd vignettes/get_started.Rmd vignettes/gpp_er_eqs.Rmd vignettes/installation.Rmd vignettes/model_structures.Rmd vignettes/models_bayes.Rmd vignettes/models_mle.Rmd vignettes/ode_methods.Rmd vignettes/simulations.Rmd
USGS-R/streamMetabolizer documentation built on Aug. 15, 2023, 7:50 a.m.