addIndexMeta: Add necessary elements of the metadata slot of an...

In YY-SONG0718/scfindME: This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis

Add necessary elements of the metadata slot of an altervnative splicing SCFind index object

Description

Add necessary elements of the metadata slot of an altervnative splicing SCFind index object

Usage

addIndexMeta.classic(object, stats, node_list, diff_cut)

## S4 method for signature 'ANY'
addIndexMeta(object, stats, node_list, diff_cut)

Arguments

object	an SCFind class object built by the method "builtAltSpliceIndex"
stats	the statistics matrix built by the function "buildMatrix.stats"
node_list	the node information matrix built by the function "buildMatrix.node_list"
diff_cut	sparse matrix with 1 denoting the removal of node PSI due to not sufficiently deviate from tissue mean

Value

an SCFind object with classic metadata components

YY-SONG0718/scfindME documentation built on April 17, 2023, 4:27 a.m.