hyperQueryCellTypes: Runs a query and performs the hypergeometric test for the...

In YY-SONG0718/scfindME: This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis

Runs a query and performs the hypergeometric test for the retrieved cell types

Description

Runs a query and performs the hypergeometric test for the retrieved cell types

Usage

cell.types.phyper.test.AS(object, node.list, datasets)

## S4 method for signature 'SCFind,character'
hyperQueryCellTypes(object, node.list, datasets)

Arguments

object	the SCFind object
node.list	AS nodes to be searched in the node.list.index (Operators: "-gene" to exclude a gene | "*gene" either gene is expressed "*-gene" either gene is expressed to be excluded)
datasets	the datasets vector that will be tested as background for the hypergeometric test

Value

a DataFrame that contains all cell types with the respective cell cardinality and the hypergeometric test

YY-SONG0718/scfindME documentation built on April 17, 2023, 4:27 a.m.