markerNodes: Performs query optimization and return the best candidate...

In YY-SONG0718/scfindME: This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis

Performs query optimization and return the best candidate gene sets

Description

This function can be used with quite long gene lists that otherwise would have no cell hits in the database

Usage

markerNodes(object, gene.list, datasets, log.message = 0)

find.marker.nodes(object, gene.list, datasets, log.message = 0)

## S4 method for signature 'SCFind,character'
markerNodes(object, gene.list, datasets, log.message = 0)

Arguments

object	SCFind object
gene.list	A list of nGenes existing in the database
datasets	the datasets of the objects to be considered
log.message	whether to print a verbose message

Value

hierarchical list of queries and their respective scores

YY-SONG0718/scfindME documentation built on April 17, 2023, 4:27 a.m.