findNodeSignatures: Find the signature genes for a cell-type

In YY-SONG0718/scfindME: This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis

Find the signature genes for a cell-type

Description

Find the signature genes for a cell-type

Find the signature genes for a cell-type

Usage

findNodeSignatures(
  object,
  cell.types,
  max.genes = 1000,
  min.cells = 10,
  max.pval = 0
)

node.signatures(
  object,
  cell.types,
  max.genes = 1000,
  min.cells = 10,
  max.pval = 0
)

## S4 method for signature 'SCFind'
findNodeSignatures(
  object,
  cell.types,
  max.genes = 1000,
  min.cells = 10,
  max.pval = 0
)

Arguments

object	the SCFind object
cell.types	a list of cell types for the list to evaluated
max.genes	threshold of number of genes to be considered for each cell type
min.cells	threshold of cell hit of a tissue
max.pval	threshold of p-value

Value

the list of gene signatures in a query of cell types

YY-SONG0718/scfindME documentation built on April 17, 2023, 4:27 a.m.