findCellTypeSpecificities: Find out how many cell-types each gene is found

In YY-SONG0718/scfindME: This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis

Find out how many cell-types each gene is found

Description

Find out how many cell-types each gene is found

Find out how many cell-types each gene is found

Usage

findCellTypeSpecificities(
  object,
  gene.list,
  datasets,
  min.cells = 10,
  min.fraction = 0.25
)

cell.type.specificity(
  object,
  gene.list,
  datasets,
  min.cells = 10,
  min.fraction = 0.25
)

## S4 method for signature 'SCFind'
findCellTypeSpecificities(
  object,
  gene.list,
  datasets,
  min.cells = 10,
  min.fraction = 0.25
)

Arguments

object	the SCFind object
gene.list	genes to be searched in the gene.index
datasets	the datasets that will be considered
min.cells	threshold of cell hit of a cell type
min.fraction	portion of total cell as threshold

Value

the list of number of cell type for each gene

YY-SONG0718/scfindME documentation built on April 17, 2023, 4:27 a.m.