findNodeSets: This function finds coordinated node sets for a gene

In YY-SONG0718/scfindME: This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis

This function finds coordinated node sets for a gene

Description

This function finds coordinated node sets for a gene

Usage

gene.node.sets(
  object,
  gene.list,
  query.type,
  node.types = c("CE", "AA", "AD", "RI", NA, "NA")
)

## S4 method for signature 'SCFind,character,character,character'
findNodeSets(
  object,
  gene.list,
  query.type,
  node.types = c("CE", "AA", "AD", "RI", NA, "NA")
)

Arguments

object	the SCFind object
gene.list	gene id or gene name to find coordinated node sets
query.type	either "gene_id" or "external_gene_name" to use in query
node.types	types of splicing nodes to consider in the gene.list

Value

a dataframe that contains nodes for gene.list

YY-SONG0718/scfindME documentation built on April 17, 2023, 4:27 a.m.