findHouseKeepingNodes: Find the set of genes that are ubiquitously expressed in a...

In YY-SONG0718/scfindME: This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis

Find the set of genes that are ubiquitously expressed in a query of cell types

Description

Find the set of genes that are ubiquitously expressed in a query of cell types

Find the set of genes that are ubiquitously expressed in a query of cell types

Usage

findHouseKeepingNodes(object, cell.types, min.recall = 0.5, max.genes = 1000)

house.keeping.nodes(object, cell.types, min.recall = 0.5, max.genes = 1000)

## S4 method for signature 'SCFind,character'
findHouseKeepingNodes(object, cell.types, min.recall = 0.5, max.genes = 1000)

Arguments

object	the SCFind object
cell.types	a list of cell types for the list to evaluated
min.recall	threshold of minimun recall value
max.genes	threshold of number of genes to be considered for each cell type

Value

the list of gene that ubiquitously expressed in a query of cell types

YY-SONG0718/scfindME documentation built on April 17, 2023, 4:27 a.m.