findCellTypes: queries cells that contain all the genes from the list

In YY-SONG0718/scfindME: This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis

queries cells that contain all the genes from the list

Description

queries cells that contain all the genes from the list

Find cell types associated with a given gene list. All cells returned express all of the genes in the given gene list

Usage

findCellTypes(object, gene.list, datasets)

findCellTypes.geneList(object, gene.list, datasets)

## S4 method for signature 'SCFind,character'
findCellTypes(object, gene.list, datasets)

Arguments

object	the SCFind object
gene.list	genes to be searched in the gene.index (Operators: "-gene" to exclude a gene | "*gene" either gene is expressed "*-gene" either gene is expressed to be excluded)
datasets	the datasets that will be considered

Value

a named numeric vector containing p-values

YY-SONG0718/scfindME documentation built on April 17, 2023, 4:27 a.m.