evaluateMarkers: Evaluate a user specific query by calculating the precision...

In YY-SONG0718/scfindME: This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis

Evaluate a user specific query by calculating the precision recall metrics

Description

Evaluate a user specific query by calculating the precision recall metrics

Usage

evaluate.cell.type.markers(
  object,
  gene.list,
  cell.types,
  background.cell.types,
  sort.field
)

## S4 method for signature 'SCFind,character'
evaluateMarkers(
  object,
  gene.list,
  cell.types,
  background.cell.types,
  sort.field = "f1"
)

Arguments

object	the SCFind object
gene.list	the list of genes to be evaluated
cell.types	a list of cell types for the list to evaluated
background.cell.types	the universe of cell.types to consider
sort.field	the dataframe will be sorted according to this field

Value

a DataFrame that each row represent a gene score for a specific cell type

YY-SONG0718/scfindME documentation built on April 17, 2023, 4:27 a.m.