plotRawPsiCorr: This function plots correlation of splicing PSI and return...

In YY-SONG0718/scfindME: This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis

This function plots correlation of splicing PSI and return significantly correlated nodes

Description

This function plots correlation of splicing PSI and return significantly correlated nodes

Usage

## S3 method for class 'raw.psi.corr'
plot(raw_psi, node.list = "all_nodes", cell.types = "all_cell_types")

## S4 method for signature 'data.frame,character,character'
plotRawPsiCorr(raw_psi, node.list = "all_nodes", cell.types = "all_cell_types")

Arguments

raw_psi	raw psi matrx, each row is a gene, each col is a cell
node.list	node list whose PSI is to be plotted, default 'all_nodes'
cell.types	cell types to consider, default 'all_cell_types'

Value

a list object with heatmap, pos corr and neg corr

YY-SONG0718/scfindME documentation built on April 17, 2023, 4:27 a.m.